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Papers: 10.1093/molbev/msaa288

https://doi.org/10.1093/molbev/msaa288

Special Care Is Needed in Applying Phylogenetic Comparative Methods to Gene Trees with Speciation and Duplication Nodes

Cited by: 6
Author(s): Tina Begum, Marc Robinson‐Rechavi
Published: over 4 years ago

Software Mentions 22

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
Very Likely Science (100)
bioconductor: treeio
Base Classes and Functions for Phylogenetic Tree Input and Output
Papers that mentioned: 32
Very Likely Science (100)
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
Very Likely Science (100)
cran: caper
Comparative Analyses of Phylogenetics and Evolution in R
Papers that mentioned: 204
Very Likely Science (93)
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
Very Likely Science (83)
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
Very Likely Science (100)
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
Very Likely Science (85)
cran: gtools
Various R Programming Tools
Papers that mentioned: 60
Very Likely Science (75)
cran: mvMORPH
Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data
Papers that mentioned: 21
Very Likely Science (85)
cran: OUwie
Analysis of Evolutionary Rates in an OU Framework
Papers that mentioned: 22
Very Likely Science (100)
cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
Very Likely Science (100)
cran: png
Read and write PNG images
Papers that mentioned: 20
Very Likely Science (75)
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
Very Likely Science (100)
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
Very Likely Science (65)
pypi: caper
Cromwell Assisted Pipeline ExecutoR
Papers that mentioned: 204
Very Likely Science (100)
pypi: fitting
fitting
Papers that mentioned: 2
Very Likely Science (65)
pypi: new
UNKNOWN
Papers that mentioned: 4
Very Likely Science (65)
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
Very Likely Science (80)
pypi: run
Python Process Run Control
Papers that mentioned: 35
Very Likely Science (65)
pypi: treeio
A pure python parser for tree data format IO
Papers that mentioned: 32
Very Likely Science (65)