Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/jxb/eraa132

https://doi.org/10.1093/jxb/eraa132

Mild drought in the vegetative stage induces phenotypic, gene expression, and DNA methylation plasticity in Arabidopsis but no transgenerational effects

Cited by: 43
Author(s): Tom J. M. Van Dooren, Amanda Bortolini Silveira, Elodie Gilbault, José M. Jiménez‐Gómez, Antoine Martin, Liên Bach, Sébastien Tisné, Leandro Quadrana, Olivier Loudet, Vincent Colot
Published: over 4 years ago

Software Mentions 3

bioconductor: methylKit
DNA methylation analysis from high-throughput bisulfite sequencing results
Papers that mentioned: 154
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
bioconductor: ShortRead
FASTQ input and manipulation
Papers that mentioned: 119