Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giz020

https://doi.org/10.1093/gigascience/giz020

MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs

Cited by: 14
Author(s): Stuart M. Brown, Hao Chen, Yuhan Hao, Bobby Peter Laungani, Thahmina Ali, Changsu Dong, Carlos Lijeron, Baekdoo Kim, Claudia Wultsch, Zhiheng Pei, Konstantinos Krampis
Published: over 5 years ago

Software Mentions 3

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

pypi: ga

A lightweight genetic algorithm library written in pure Python
Papers that mentioned: 4

pypi: MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306