Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giaa152

https://doi.org/10.1093/gigascience/giaa152

Tool recommender system in Galaxy using deep learning

Cited by: 7
Author(s): Anup Kumar, Helena Rasche, Björn Grüning, Rolf Backofen
Published: almost 4 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Papers that mentioned: 25
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
pypi: ipython
IPython: Productive Interactive Computing
Papers that mentioned: 40
pypi: tensorflow-gpu
Removed: please install "tensorflow" instead.
Papers that mentioned: 10