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Papers: 10.1093/gigascience/giaa151

https://doi.org/10.1093/gigascience/giaa151

SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

Cited by: 438
Author(s): Matthew D. Young, Sam Behjati
Published: over 4 years ago

Software Mentions 4

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
Very Likely Science (83)
cran: cellranger
Translate Spreadsheet Cell Ranges to Rows and Columns
Papers that mentioned: 79
Very Likely Science (95)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
cran: SoupX
Single Cell mRNA Soup eXterminator
Papers that mentioned: 17
Very Likely Science (100)