Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bioinformatics/btz436

https://doi.org/10.1093/bioinformatics/btz436

snakePipes: facilitating flexible, scalable and integrative epigenomic analysis

Cited by: 92
Author(s): Vivek Bhardwaj, Steffen Heyne, Katarzyna Sikora, Leily Rabbani, Michael Rauer, Fabian Kilpert, Andreas S. Richter, Devon P. Ryan, Thomas Manke
Published: over 5 years ago

Software Mentions 3

pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C data
Papers that mentioned: 33
pypi: pyGenomeTracks
Command-line tool to make beautiful and reproducible genome browser snapshots
Papers that mentioned: 20
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45