Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bioinformatics/btz031

https://doi.org/10.1093/bioinformatics/btz031

ensembldb: an R package to create and use Ensembl-based annotation resources

Cited by: 76
Author(s): Johannes Michael Rainer, Laurent Gatto, Christian X. Weichenberger
Published: almost 6 years ago

Software Mentions 7

bioconductor: AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Papers that mentioned: 73
bioconductor: AnnotationFilter
Facilities for Filtering Bioconductor Annotation Resources
Papers that mentioned: 1
bioconductor: AnnotationHub
Client to access AnnotationHub resources
Papers that mentioned: 39
bioconductor: ensembldb
Utilities to create and use Ensembl-based annotation databases
Papers that mentioned: 12
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: ggbio
Visualization tools for genomic data
Papers that mentioned: 53
bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134