Papers: 10.1093/bioinformatics/btw725
https://doi.org/10.1093/bioinformatics/btw725
Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions
Cited by: 436
Author(s): Martha Zakrzewski, Carla Proietti, Jonathan Ellis, Shihab Hasan, Marie-Jo Brion, Bernard Berger, Lutz Krause
Published: over 8 years ago
Software Mentions 2
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
Very Likely Science (100)
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306
Very Likely Science (100)