Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bioinformatics/btw725

https://doi.org/10.1093/bioinformatics/btw725

Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions

Cited by: 436
Author(s): Martha Zakrzewski, Carla Proietti, Jonathan Ellis, Shihab Hasan, Marie-Jo Brion, Bernard Berger, Lutz Krause
Published: almost 8 years ago

Software Mentions 2

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306