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Papers: 10.1093/bioinformatics/btu641

https://doi.org/10.1093/bioinformatics/btu641

Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance

Cited by: 92
Author(s): Tae-Hyuk Ahn, Juanjuan Chai, Chongle Pan
Published: almost 12 years ago

Software Mentions 3

cran: SAMtool
Stock Assessment Methods Toolkit
Papers that mentioned: 30
Very Likely Science (90)
pypi: Interface
Interface implementation
Papers that mentioned: 291
Very Likely Science (65)
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
Very Likely Science (100)