Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bioinformatics/btt389

https://doi.org/10.1093/bioinformatics/btt389

Scalable metagenomic taxonomy classification using a reference genome database

Cited by: 173
Author(s): Sasha Ames, David Hysom, Shea N. Gardner, Greg Lloyd, Maya Gokhale, Jonathan Allen
Published: over 11 years ago

Software Mentions 1

pypi: MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306