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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1093/bioinformatics/bts477

https://doi.org/10.1093/bioinformatics/bts477

easyRNASeq: a bioconductor package for processing RNA-Seq data

Cited by: 96
Author(s): Nicolas Delhomme, Ismaël Padioleau, Eileen E. M. Furlong, Lars M. Steinmetz
Published: almost 13 years ago

Software Mentions 9

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
Very Likely Science (100)
bioconductor: easyRNASeq
Count summarization and normalization for RNA-Seq data
Papers that mentioned: 17
Very Likely Science (90)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: genomeIntervals
Operations on genomic intervals
Papers that mentioned: 5
Very Likely Science (90)
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
Very Likely Science (90)
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
bioconductor: IRanges
Foundation of integer range manipulation in Bioconductor
Papers that mentioned: 62
Very Likely Science (75)
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
Very Likely Science (90)
bioconductor: ShortRead
FASTQ input and manipulation
Papers that mentioned: 119
Very Likely Science (90)