Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1080/19490976.2021.1888673

https://doi.org/10.1080/19490976.2021.1888673

Links between gut microbiome composition and fatty liver disease in a large population sample

Cited by: 31
Author(s): Matti O. Ruuskanen, Fredrik Åberg, Ville Männistö, Aki S. Havulinna, Guillaume Méric, Yang Liu, Rohit Loomba, Yoshiki Vázquez-Baeza, Anupriya Tripathi, Liisa Valsta, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J. Niiranen
Published: almost 4 years ago

Software Mentions 14

bioconductor: ALDEx2
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
Papers that mentioned: 136
bioconductor: microbiome
Microbiome Analytics
Papers that mentioned: 114
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: mlr
Machine Learning in R
Papers that mentioned: 64
cran: mlrMBO
Bayesian Optimization and Model-Based Optimization of Expensive Black-Box Functions
Papers that mentioned: 5
cran: pdp
Partial Dependence Plots
Papers that mentioned: 16
cran: precrec
Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves
Papers that mentioned: 14
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
cran: xgboost
Extreme Gradient Boosting
Papers that mentioned: 207
pypi: microbiome
Papers that mentioned: 114
pypi: mlr
Linear regression utility with inference tests, residual analysis, outlier visualization, multicollinearity test, and other features
Papers that mentioned: 64
pypi: mpwt
Multiprocessing for Pathway Tools
Papers that mentioned: 1
pypi: pdp
Build fast data processing pipelines easily
Papers that mentioned: 16
pypi: xgboost
XGBoost Python Package
Papers that mentioned: 207