Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/srep42130

https://doi.org/10.1038/srep42130

Dissecting the brown adipogenic regulatory network using integrative genomics

Cited by: 20
Author(s): Rachana Pradhan, Johannes Bues, Vincent Gardeux, Petra Schwalie, Daniel Alpern, Wanze Chen, Julie Russeil, Sunil K. Raghav, Bart Deplancke
Published: almost 8 years ago

Software Mentions 13

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: made4
Multivariate analysis of microarray data using ADE4
Papers that mentioned: 86
bioconductor: Mfuzz
Soft clustering of time series gene expression data
Papers that mentioned: 160
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: custom
Custom self carry
Papers that mentioned: 1,363
pypi: voom
A python message bus that you can put 4 million volts through.
Papers that mentioned: 136