Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/srep20064

https://doi.org/10.1038/srep20064

Digital detection of endonuclease mediated gene disruption in the HIV provirus

Cited by: 21
Author(s): Ruth Hall Sedlak, Shu Liang, Nixon Niyonzima, Harshana S. De Silva Feelixge, Pavitra Roychoudhury, Alexander L. Greninger, Nicholas Weber, Sandrine Boissel, Andrew M. Scharenberg, Anqi Cheng, Amalia Magaret, Roger E. Bumgarner, Daniel Stone, Keith R. Jerome
Published: almost 9 years ago

Software Mentions 4

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
bioconductor: ShortRead
FASTQ input and manipulation
Papers that mentioned: 119
pypi: custom
Custom self carry
Papers that mentioned: 1,363