Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/srep19899

https://doi.org/10.1038/srep19899

Global transcriptomic responses of Escherichia coli K-12 to volatile organic compounds

Cited by: 34
Author(s): Pui Yi Yung, Letizia Lo Grasso, Abeed Fatima Mohidin, Enzo Acerbi, Jamie Hinks, Thomas Seviour, Enrico Marsili, Federico M. Lauro
Published: almost 9 years ago

Software Mentions 7

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
cran: venn
Draw Venn Diagrams
Papers that mentioned: 44
pypi: heatmap
Module to create heatmaps
Papers that mentioned: 285
pypi: venn
Venn diagrams for 2, 3, 4, 5, 6 sets
Papers that mentioned: 44