Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/sdata.2017.33

https://doi.org/10.1038/sdata.2017.33

Transcriptomic profiling of 39 commonly-used neuroblastoma cell lines

Cited by: 102
Author(s): Jo Lynne Harenza, Maura Diamond, Rebecca N. Adams, Michael Song, Heather L. Davidson, Lori S. Hart, Maiah H. Dent, Paolo Fortina, C. Patrick Reynolds, John M. Maris
Published: over 7 years ago

Software Mentions 4

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: kallisto

The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307