Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-020-76881-x

https://doi.org/10.1038/s41598-020-76881-x

Cited by: 81
Author(s): Luis A. Corchete, Elizabeta A. Rojas, Diego Alonso-López, Javier De Las Rivas, Norma C. Gutiérrez, F.J. Burguillo
Published: over 3 years ago

Software Mentions 10

bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count data
Papers that mentioned: 139
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
Papers that mentioned: 261
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: NOISeq
Exploratory analysis and differential expression for RNA-seq data
Papers that mentioned: 321
cran: dendextend
Extending 'dendrogram' Functionality in R
Papers that mentioned: 201
cran: dunn.test
Dunn's Test of Multiple Comparisons Using Rank Sums
Papers that mentioned: 35
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071