Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-019-44765-4

https://doi.org/10.1038/s41598-019-44765-4

Monozygotic twins and triplets discordant for amyotrophic lateral sclerosis display differential methylation and gene expression

Cited by: 35
Author(s): Ingrid Tarr, Emma McCann, Beben Benyamin, Timothy J. Peters, Natalie A. Twine, Katharine Y. Zhang, Qiongyi Zhao, Zong Hong Zhang, Dominic B. Rowe, Garth A. Nicholson, Denis C. Bauer, Susan J. Clark, Ian P. Blair, Kelly L. Williams
Published: over 5 years ago

Software Mentions 11

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: minfi
Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506
bioconductor: RnBeads
RnBeads
Papers that mentioned: 145
bioconductor: shinyMethyl
Interactive visualization for Illumina methylation arrays
Papers that mentioned: 18
bioconductor: wateRmelon
Illumina 450 and EPIC methylation array normalization and metrics
Papers that mentioned: 108
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
cran: glmmTMB
Generalized Linear Mixed Models using Template Model Builder
Papers that mentioned: 373
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
pypi: cluster

Papers that mentioned: 416
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071