Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-018-31873-w

https://doi.org/10.1038/s41598-018-31873-w

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

Cited by: 47
Author(s): Natacha Couto, Leonard Schuele, Erwin Raangs, Miguel P. Machado, Catarina Mendes, Tiago S. Jesus, Monika A. Chlebowicz, Sigrid Rosema, Mário Ramirez, João André Carriço, Ingo B. Autenrieth, Alex Friedrich, Silke Peter, John W. A. Rossen
Published: about 6 years ago

Software Mentions 1

pypi: MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306