Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1038/s41598-018-23207-7
https://doi.org/10.1038/s41598-018-23207-7
Comparative High-Resolution Transcriptome Sequencing of Lymphoma Cell Lines and de novo Lymphomas Reveals Cell-Line-Specific Pathway Dysregulation
Cited by: 10
Author(s): Leila Taher, Julia Beck, Wen Li, Catrin Roolf, Jan T. Soller, Barbara C. Rütgen, Sabine E. Hammer, Murali Chodisetti, Sina Sender, Katharina A Sterenczak, Georg Fuellen, Christian Junghanß, Bertram Brenig, Ingo Nolte, Ekkehard Schütz, Hugo Murua Escobar
Published: over 6 years ago
Software Mentions 4
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matricesPapers that mentioned: 1,283
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assaysPapers that mentioned: 3,071