Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41597-019-0183-6

https://doi.org/10.1038/s41597-019-0183-6

Cited by: 127
Author(s): Gabriel E. Hoffman, Jaroslav Bendl, Georgios Voloudakis, Kelsey S. Montgomery, Laura Sloofman, Ying-Chih Wang, Hardik Shah, Mads E. Hauberg, Jessica Johnson, Kiran Girdhar, Lingyun Song, John F. Fullard, Robin Kramer, Chang-Gyu Hahn, Raquel E. Gur, Stefano Marenco, Barbara K. Lipska, David A. Lewis, Vahram Haroutunian, Scott E. Hemby, Patrick F. Sullivan, Schahram Akbarian, Andrew Chess, Joseph D. Buxbaum, Greg Crawford, Enrico Domenici, Bernie Devlin, Solveig K. Sieberts, Mette A. Peters, Panos Roussos
Published: over 4 years ago

Software Mentions 8

bioconductor: cqn
Conditional quantile normalization
Papers that mentioned: 14
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
cran: Eagle
Multiple Locus Association Mapping on a Genome-Wide Scale
Papers that mentioned: 140
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: bim
Benchmark interpretability methods.
Papers that mentioned: 1
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233