Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.xpro.2021.100397

https://doi.org/10.1016/j.xpro.2021.100397

Protocol for comprehensive RNA sequencing analysis of murine long non-coding RNAs during aging

Cited by: 0
Author(s): Xinyue Lu, Qi Zhou, Jin Liu, Li Sun
Published: over 3 years ago

Software Mentions 11

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: multiqc
Create aggregate bioinformatics analysis reports across many samples and tools
Papers that mentioned: 37