Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.stem.2018.06.014

https://doi.org/10.1016/j.stem.2018.06.014

Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells

Cited by: 137
Author(s): Tahsin Stefan Barakat, Florian Halbritter, Man Zhang, André F. Rendeiro, Elena Perenthaler, Christoph Bock, Ian Chambers
Published: about 6 years ago

Software Mentions 6

bioconductor: CODEX
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
Papers that mentioned: 72
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: LOLA
Locus overlap analysis for enrichment of genomic ranges
Papers that mentioned: 56
cran: ROSE
Random Over-Sampling Examples
Papers that mentioned: 131
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203