Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.jcmgh.2021.04.011

https://doi.org/10.1016/j.jcmgh.2021.04.011

Transcriptomic Profiling of Collagenous Colitis Identifies Hallmarks of Nondestructive Inflammatory Bowel Disease

Cited by: 5
Author(s): Celia Escudero-Hernández, Atle van Beelen Granlund, Arne K. Sandvik, Stefan Koch, Ann Elisabet Østvik, Andreas Münch
Published: almost 4 years ago

Software Mentions 3

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893