Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.cell.2021.03.012

https://doi.org/10.1016/j.cell.2021.03.012

Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions

Cited by: 126
Author(s): Ryan A. Flynn, Julia A. Belk, Yanyan Qi, Yuki Yasumoto, Wei Jin, Mia Madel Alfajaro, Quanming Shi, Maxwell R. Mumbach, Aditi Limaye, Peter C DeWeirdt, Cameron O. Schmitz, Kevin R. Parker, Elizabeth Woo, Howard Y. Chang, Tamás L. Horváth, Jan E. Carette, Carolyn R. Bertozzi, Craig B. Wilen, Ansuman T. Satpathy
Published: over 3 years ago

Software Mentions 3

bioconductor: DEP
Differential Enrichment analysis of Proteomics data
Papers that mentioned: 35
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138