Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.cell.2020.05.035

https://doi.org/10.1016/j.cell.2020.05.035

Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection

Cited by: 26
Author(s): Jessica Ho, Matthew Angel, Yixuan Ma, Elizabeth Sloan, Guojun Wang, Carles Martínez-Romero, Marta Alenquer, Vladimir Roudko, Liliane Chung, Simin Zheng, Max W. Chang, Yesai Fstkchyan, Sara Clohisey, Adam M. Dinan, James S. Gibbs, Robert J. Gifford, Rong Shen, Quan Gu, Nerea Irigoyen, Laura Campisi, Cheng Huang, Nan Zhao, Joshua D. Jones, Ingeborg van Knippenberg, Zeyu Zhu, Natasha Moshkina, Léa Meyer, Justine Noel, Zuleyma Peralta, Veronica V. Rezelj, Robyn M. Kaake, Brad R. Rosenberg, Bo Wang, Jiajie Wei, Slobodan Paessler, Helen Wise, Jeffrey R. Johnson, Alessandro Vannini, Maria João Amorim, J Kenneth Baillie, Emily R. Miraldi, Christopher Benner, Ian Brierley, Paul Digard, Marta Łuksza, Andrew E. Firth, Nevan J. Krogan, Benjamin Greenbaum, Megan K. L. MacLeod, Harm van Bakel, Adolfo Garcı́a-Sastre, Jonathan W. Yewdell, Edward Hutchinson, Ivan Marazzi
Published: over 4 years ago

Software Mentions 3

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: TreeTime
TreeTime is a to-do list manager, test report tool, project manager, family ancestry editor,mind-mapping tool, etc. Using TreeTime you can categorise and organise any data in tree structures.You can define several trees, each with a different structure, on the same data. You can use functions(sums, ratios and means) recursively up the branches of a tree.
Papers that mentioned: 82