Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1007/s13365-020-00931-3

https://doi.org/10.1007/s13365-020-00931-3

Transcriptional signatures of Zika virus infection in astrocytes

Cited by: 3
Author(s): Blake Schouest, Tiffany A. Peterson, Dawn Szeltner, Elizabeth A. Scheef, Melody Baddoo, Nathan Ungerleider, Erik K. Flemington, Andrew G. MacLean, Nicholas J. Maness
Published: over 3 years ago

Software Mentions 8

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling
Papers that mentioned: 123

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: ReactomePA

Reactome Pathway Analysis
Papers that mentioned: 171

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

cran: VennDiagram

Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893