Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1007/s12551-018-0489-1

https://doi.org/10.1007/s12551-018-0489-1

Hi-C analysis: from data generation to integration

Cited by: 62
Author(s): Koustav Pal, Mattia Forcato, Francesco Ferrari
Published: about 6 years ago

Software Mentions 8

bioconductor: diffHic
Differential Analyis of Hi-C Data
Papers that mentioned: 12
bioconductor: GOTHiC
Binomial test for Hi-C data analysis
Papers that mentioned: 17
cran: HiCseg
Detection of domains in HiC data
Papers that mentioned: 17
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: gcMapExplorer
A platform to visualize and analyze genome contact maps
Papers that mentioned: 3
pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C data
Papers that mentioned: 33
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832