Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1002/cpz1.60

https://doi.org/10.1002/cpz1.60

Genomic Epidemiology Analysis of Infectious Disease Outbreaks Using TransPhylo

Cited by: 24
Author(s): Xavier Didelot, Michaela Kendall, Yuanwei Xu, Peter J White, Noel D. McCarthy
Published: over 3 years ago

Software Mentions 7

cran: devtools
Tools to Make Developing R Packages Easier
Papers that mentioned: 157
cran: LSD
Lots of Superior Depictions
Papers that mentioned: 55
cran: lubridate
Make Dealing with Dates a Little Easier
Papers that mentioned: 84
cran: TransPhylo
Inference of Transmission Tree from a Dated Phylogeny
Papers that mentioned: 25
cran: treedater
Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
Papers that mentioned: 16
pypi: devtools
Python's missing debug print command, and more.
Papers that mentioned: 157
pypi: TreeTime
TreeTime is a to-do list manager, test report tool, project manager, family ancestry editor,mind-mapping tool, etc. Using TreeTime you can categorise and organise any data in tree structures.You can define several trees, each with a different structure, on the same data. You can use functions(sums, ratios and means) recursively up the branches of a tree.
Papers that mentioned: 82