Packages with Software Mentions in Scientific Papers

cran: hmeasure

The H-Measure and Other Scalar Classification Performance Metrics
Papers that mentioned: 2

Very Likely Science (83)

pypi: assess

Assess is a python package that implements a number of analytical solutions to the Stokes equations in cylindrical and spherical shell domains.
Papers that mentioned: 2

Very Likely Science (100)

cran: covr

Test Coverage for Packages
Papers that mentioned: 2

Very Likely Science (79)

cran: CFF

Simple Similarity for User-Based Collaborative Filtering Systems
Papers that mentioned: 2

Very Likely Science (75)

bioconductor: immunoClust

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
Papers that mentioned: 2

Very Likely Science (75)

cran: metRology

Support for Metrological Applications
Papers that mentioned: 2

Very Likely Science (75)

bioconductor: isomiRs

Analyze isomiRs and miRNAs from small RNA-seq
Papers that mentioned: 2

Very Likely Science (100)

pypi: start

Very simple command to start a single process from a Procfile
Papers that mentioned: 2

Very Likely Science (65)

pypi: SRF

Scalable Reconstruction Framework.
Papers that mentioned: 2

Very Likely Science (85)

cran: distrEx

Extensions of Package 'distr'
Papers that mentioned: 2

Very Likely Science (75)

pypi: Sleepy

A RESTful sort-of-CMS built primarily on Pylons and Berkeley DBXML
Papers that mentioned: 2

Likely Science (40)

pypi: cartography

Explore assets and their relationships across your technical infrastructure.
Papers that mentioned: 2

Possibly Science (35)

cran: mixtox

Dose Response Curve Fitting and Mixture Toxicity Assessment
Papers that mentioned: 2

Very Likely Science (75)

cran: CALIBERrfimpute

Multiple Imputation Using MICE and Random Forest
Papers that mentioned: 2

Very Likely Science (75)

cran: ExactCIdiff

Inductive Confidence Intervals for the Difference Between Two Proportions
Papers that mentioned: 2

Very Likely Science (83)

pypi: omnic

Mostly stateless microservice framework for generating on-the-fly thumbs and previews of a wide variety of file types.
Papers that mentioned: 2

Very Likely Science (80)

cran: cond

Approximate Conditional Inference for Logistic and Loglinear Models
Papers that mentioned: 2

Very Likely Science (75)

pypi: ht

Heat transfer component of Chemical Engineering Design Library (ChEDL)
Papers that mentioned: 2

Very Likely Science (80)

pypi: ara

ARA Records Ansible
Papers that mentioned: 2

Very Likely Science (80)

cran: ClassComparison

Classes and Methods for "Class Comparison" Problems on Microarrays
Papers that mentioned: 2

Very Likely Science (85)

cran: AntAngioCOOL

Anti-Angiogenic Peptide Prediction
Papers that mentioned: 2

Very Likely Science (75)

cran: cml

Conditional Manifold Learning
Papers that mentioned: 2

Very Likely Science (83)

pypi: bayesopt

BayesOpt is an efficient implementation of the Bayesian optimization methodology for nonlinear optimization, experimental design and hyperparameter tuning
Papers that mentioned: 2

Likely Science (50)

pypi: SecureKey

SecureKey test
Papers that mentioned: 2

Very Likely Science (65)

cran: rbi

Interface to 'LibBi'
Papers that mentioned: 2

Very Likely Science (100)

pypi: maze

Application that generates mazes
Papers that mentioned: 2

Very Likely Science (65)

cran: GLDEX

Fitting Single and Mixture of Generalised Lambda Distributions
Papers that mentioned: 2

Very Likely Science (75)

bioconductor: affyILM

Linear Model of background subtraction and the Langmuir isotherm
Papers that mentioned: 2

Very Likely Science (90)

cran: MatrixModels

Modelling with Sparse and Dense Matrices
Papers that mentioned: 2

Very Likely Science (85)

cran: cumSeg

Change Point Detection in Genomic Sequences
Papers that mentioned: 2

Very Likely Science (75)

bioconductor: gCrisprTools

Suite of Functions for Pooled Crispr Screen QC and Analysis
Papers that mentioned: 2

Very Likely Science (100)

pypi: anno

Anno is a thin user interface on Markdown files for easy and local text editing, organization, and program composability.
Papers that mentioned: 2

Very Likely Science (65)

cran: BBEST

Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
Papers that mentioned: 2

Very Likely Science (85)

pypi: snakecase

Convert camelCase to snake_case
Papers that mentioned: 2

Very Likely Science (65)

bioconductor: LowMACA

LowMACA - Low frequency Mutation Analysis via Consensus Alignment
Papers that mentioned: 2

Very Likely Science (100)

pypi: Ash

Thin wrapper for virtualenv for easy environment management
Papers that mentioned: 2

Very Likely Science (65)

pypi: te

Toggl Entry - CLI REST API client for Toggl
Papers that mentioned: 2

Likely Science (40)

pypi: quiet

Quiet Modem
Papers that mentioned: 2

Very Likely Science (65)

cran: regsem

Regularized Structural Equation Modeling
Papers that mentioned: 2

Very Likely Science (95)

cran: HiResTEC

Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data
Papers that mentioned: 2

Very Likely Science (75)

pypi: arboreto

Scalable gene regulatory network inference using tree-based ensemble regressors
Papers that mentioned: 2

Very Likely Science (100)

pypi: pyentropy

Entropy and Information Theoretic Estimates
Papers that mentioned: 2

Very Likely Science (65)

cran: gpmap

Analysing and Plotting Genotype-Phenotype Maps
Papers that mentioned: 2

Very Likely Science (85)

bioconductor: MinimumDistance

A Package for De Novo CNV Detection in Case-Parent Trios
Papers that mentioned: 2

Very Likely Science (73)

cran: dynlm

Dynamic Linear Regression
Papers that mentioned: 2

Very Likely Science (85)

bioconductor: BloodGen3Module

This R package for performing module repertoire analyses and generating fingerprint representations
Papers that mentioned: 2

Very Likely Science (65)

bioconductor: genbankr

Parsing GenBank files into semantically useful objects
Papers that mentioned: 2

Very Likely Science (75)

pypi: astral

Calculations for the position of the sun and moon.
Papers that mentioned: 2

Very Likely Science (65)

cran: DynTxRegime

Methods for Estimating Optimal Dynamic Treatment Regimes
Papers that mentioned: 2

Very Likely Science (75)

cran: hdm

High-Dimensional Metrics
Papers that mentioned: 2

Very Likely Science (75)

cran: eemR

Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data
Papers that mentioned: 2

Very Likely Science (100)

pypi: hrv

A python package for heart rate variability analysis
Papers that mentioned: 2

Very Likely Science (60)

bioconductor: geneplast

Evolutionary and plasticity analysis of orthologous groups
Papers that mentioned: 2

Very Likely Science (100)

cran: nandb

Number and Brightness Image Analysis
Papers that mentioned: 2

Very Likely Science (85)

pypi: q2-clawback

Create and work with class weights in QIIME 2.
Papers that mentioned: 2

Very Likely Science (65)

pypi: SVFS

Multi-purpose virtual file system inside single file
Papers that mentioned: 2

Very Likely Science (65)

cran: hive

Hadoop InteractiVE
Papers that mentioned: 2

Very Likely Science (75)

bioconductor: geNetClassifier

Classify diseases and build associated gene networks using gene expression profiles
Papers that mentioned: 2

Very Likely Science (100)

pypi: aos

A shape language for arbitrary data
Papers that mentioned: 2

Very Likely Science (100)

pypi: dynamo

Simple DynamoDB Interface.
Papers that mentioned: 2

Very Likely Science (100)

cran: MTLR

Survival Prediction with Multi-Task Logistic Regression
Papers that mentioned: 2

Very Likely Science (85)

pypi: podcast

An easy way to see the importpodcast site.
Papers that mentioned: 2

Very Likely Science (80)

pypi: aida

Papers that mentioned: 2

Unlikely Science (0)

pypi: an

Scraping and parsing amazon
Papers that mentioned: 2

Very Likely Science (65)

cran: mplot

Graphical Model Stability and Variable Selection Procedures
Papers that mentioned: 2

Very Likely Science (100)

cran: glmtree

Logistic Regression Trees
Papers that mentioned: 2

Very Likely Science (85)

cran: CINNA

Deciphering Central Informative Nodes in Network Analysis
Papers that mentioned: 2

Very Likely Science (85)

bioconductor: qpcrNorm

Data-driven normalization strategies for high-throughput qPCR data.
Papers that mentioned: 2

Very Likely Science (73)

cran: EpiDynamics

Dynamic Models in Epidemiology
Papers that mentioned: 2

Very Likely Science (87)

cran: GAabbreviate

Abbreviating Items Measures using Genetic Algorithms
Papers that mentioned: 2

Very Likely Science (93)

bioconductor: TBSignatureProfiler

Profile RNA-Seq Data Using TB Pathway Signatures
Papers that mentioned: 2

Very Likely Science (100)

cran: XNomial

Exact Goodness-of-Fit Test for Multinomial Data with Fixed Probabilities
Papers that mentioned: 2

Very Likely Science (83)

cran: DataCombine

Tools for Easily Combining and Cleaning Data Sets
Papers that mentioned: 2

Very Likely Science (75)

pypi: infinity

All-in-one infinity value for Python. Can be compared to any object.
Papers that mentioned: 2

Very Likely Science (65)

cran: coop

Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations
Papers that mentioned: 2

Very Likely Science (100)

cran: gambin

Fit the Gambin Model to Species Abundance Distributions
Papers that mentioned: 2

Very Likely Science (99)

bioconductor: contiBAIT

Improves Early Build Genome Assemblies using Strand-Seq Data
Papers that mentioned: 2

Very Likely Science (90)

cran: DatabaseConnector

Connecting to Various Database Platforms
Papers that mentioned: 2

Very Likely Science (100)

pypi: moira

Quality-filter raw sequence reads using the Poisson binomial filtering algorithm
Papers that mentioned: 2

Very Likely Science (85)

pypi: compositional

Compositional data analysis in Python
Papers that mentioned: 2

Very Likely Science (100)

cran: DTRreg

DTR Estimation and Inference via G-Estimation, Dynamic WOLS, Q-Learning, and Dynamic Weighted Survival Modeling (DWSurv)
Papers that mentioned: 2

Very Likely Science (85)

bioconductor: scReClassify

scReClassify: post hoc cell type classification of single-cell RNA-seq data
Papers that mentioned: 2

Very Likely Science (100)

cran: gb

Generalize Lambda Distribution and Generalized Bootstrapping
Papers that mentioned: 2

Very Likely Science (88)

pypi: sudo

Modular Python to execute any subprocess commands as another user(not necessarily superuser/root)
Papers that mentioned: 2

Very Likely Science (65)

cran: LeafArea

Rapid Digital Image Analysis of Leaf Area
Papers that mentioned: 2

Very Likely Science (89)

pypi: Contextual

Replace globals with context-safe variables and services
Papers that mentioned: 2

Very Likely Science (65)

cran: gamlss.dist

Distributions for Generalized Additive Models for Location Scale and Shape
Papers that mentioned: 2

Very Likely Science (83)

pypi: human

Human intelligence module: solves AI-complete problems using MobileWorks.
Papers that mentioned: 2

Very Likely Science (65)

cran: ggplotgui

Create Ggplots via a Graphical User Interface
Papers that mentioned: 2

Very Likely Science (83)

bioconductor: universalmotif

Import, Modify, and Export Motifs with R
Papers that mentioned: 2

Very Likely Science (75)

A simple in-process python scheduler library with asyncio, threading and timezone support. Use datetime standard library objects for planning of Jobs depending on time cycles, fixed times, weekdays, dates, weights, offsets and execution counts.
Papers that mentioned: 2

Likely Science (55)