Packages with Software Mentions in Scientific Papers

TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images.
Papers that mentioned: 2

Very Likely Science (90)

pypi: dr

An ed-like devRant client
Papers that mentioned: 2

Very Likely Science (65)

pypi: dicom2nifti

package for converting dicom files to nifti
Papers that mentioned: 2

Very Likely Science (80)

A comprehensive implementation of dynamic time warping (DTW) algorithms. DTW computes the optimal (least cumulative distance) alignment between points of two time series. Common DTW variants covered include local (slope) and global (window) constraints, subsequence matches, arbitrary distance definitions, normalizations, minimum variance matching, and so on. Provides cumulative distances, alignments, specialized plot styles, etc.
Papers that mentioned: 2

Very Likely Science (90)

pypi: SensorData

Storing sensordata in DB
Papers that mentioned: 2

Very Likely Science (65)

cran: HHG

Heller-Heller-Gorfine Tests of Independence and Equality of Distributions
Papers that mentioned: 2

Very Likely Science (100)

pypi: MiniSom

Minimalistic implementation of the Self Organizing Maps (SOM)
Papers that mentioned: 2

Very Likely Science (80)

cran: paco

Procrustes Application to Cophylogenetic Analysis
Papers that mentioned: 2

Very Likely Science (85)

cran: MPSEM

Modeling Phylogenetic Signals using Eigenvector Maps
Papers that mentioned: 2

Very Likely Science (85)

cran: FateID

Quantification of Fate Bias in Multipotent Progenitors
Papers that mentioned: 2

Very Likely Science (75)

pypi: Senta

A sentiment classification tools made by Baidu NLP.
Papers that mentioned: 2

Very Likely Science (86)

cran: svydiags

Linear Regression Model Diagnostics for Survey Data
Papers that mentioned: 2

Very Likely Science (93)

pypi: eClinic

A LAN based electronic clinical management system
Papers that mentioned: 2

Very Likely Science (90)

bioconductor: ggtreeExtra

An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"
Papers that mentioned: 2

Very Likely Science (100)

pypi: PyChem

A platform-independent graphical environment for multivariate analysis incorporating a number of categorical and quanitative multivariate modelling routines
Papers that mentioned: 2

Very Likely Science (90)

pypi: maboss

A python and jupyter API for the MaBoSS software
Papers that mentioned: 2

Very Likely Science (65)

pypi: flo

enable rapid iteration and development of data workflows
Papers that mentioned: 2

Very Likely Science (65)

bioconductor: Clonality

Clonality testing
Papers that mentioned: 2

Very Likely Science (75)

cran: erpR

Event-related potentials (ERP) analysis, graphics and utility functions
Papers that mentioned: 2

Possibly Science (35)

cran: EcoIndR

Ecological Indicators
Papers that mentioned: 2

Very Likely Science (85)

cran: nnlasso

Non-Negative Lasso and Elastic Net Penalized Generalized Linear Models
Papers that mentioned: 2

Very Likely Science (75)

cran: reutils

Talk to the NCBI EUtils
Papers that mentioned: 2

Very Likely Science (95)

cran: NormExpression

Normalize Gene Expression Data using Evaluated Methods
Papers that mentioned: 2

Very Likely Science (93)

cran: dtree

Decision Trees
Papers that mentioned: 2

Very Likely Science (75)

cran: ezr

Easy Use of R via Shiny App for Basic Analyses of Experimental Data
Papers that mentioned: 2

Very Likely Science (100)

pypi: bfilter

A Simple Bloom Filter for Python
Papers that mentioned: 2

Very Likely Science (65)

cran: oclust

Gaussian Model-Based Clustering with Outliers
Papers that mentioned: 2

Very Likely Science (75)

cran: ODB

Open Document Databases (.odb) Management
Papers that mentioned: 2

Very Likely Science (75)

pypi: mds

Markdown Server
Papers that mentioned: 2

Very Likely Science (65)

cran: dti

Analysis of Diffusion Weighted Imaging (DWI) Data
Papers that mentioned: 2

Very Likely Science (85)

cran: ontologyPlot

Visualising Sets of Ontological Terms
Papers that mentioned: 2

Very Likely Science (83)

cran: ontologySimilarity

Calculating Ontological Similarities
Papers that mentioned: 2

Very Likely Science (83)

pypi: api

Consume an API from ReadMe Build
Papers that mentioned: 2

Very Likely Science (65)

cran: MultivariateRandomForest

Models Multivariate Cases Using Random Forests
Papers that mentioned: 2

Very Likely Science (85)

pypi: folium

Make beautiful maps with Leaflet.js & Python
Papers that mentioned: 2

Very Likely Science (100)

cran: multiwayvcov

Multi-Way Standard Error Clustering
Papers that mentioned: 2

Very Likely Science (75)

cran: multinet

Analysis and mining of multilayer social networks
Papers that mentioned: 2

Very Likely Science (85)

cran: RGenData

Generates Multivariate Nonnormal Data and Determines How Many Factors to Retain
Papers that mentioned: 2

Very Likely Science (93)

pypi: ap

AP powers-up commands with AWS profile, assume-role and MFA functionality.
Papers that mentioned: 2

Very Likely Science (65)

pypi: Hydras

A module for constructions of structured binary packets.
Papers that mentioned: 2

Very Likely Science (65)

pypi: bgen

Package for loading data from bgen files
Papers that mentioned: 2

Very Likely Science (80)

pypi: entrezpy

Dedicated library to query and retrieve data from Entrez databases at NCBI
Papers that mentioned: 2

Very Likely Science (100)

cran: pairwiseCI

Confidence Intervals for Two Sample Comparisons
Papers that mentioned: 2

Very Likely Science (83)

cran: parallelMCMCcombine

Combining Subset MCMC Samples to Estimate a Posterior Density
Papers that mentioned: 2

Very Likely Science (83)

cran: MultBiplotR

Multivariate Analysis Using Biplots in R
Papers that mentioned: 2

Very Likely Science (85)

pypi: browse

Open a web page in a browser, as simple as that...
Papers that mentioned: 2

Very Likely Science (80)

pypi: eye

A generic web-based browser of ZODB databases.
Papers that mentioned: 2

Very Likely Science (65)

cran: FinePop

Fine-Scale Population Analysis
Papers that mentioned: 2

Very Likely Science (85)

cran: pedgene

Gene-Level Variant Association Tests for Pedigree Data
Papers that mentioned: 2

Very Likely Science (83)

pypi: btools

Command line navigation and organization tools
Papers that mentioned: 2

Very Likely Science (65)

cran: monmlp

Multi-Layer Perceptron Neural Network with Optional Monotonicity Constraints
Papers that mentioned: 2

Very Likely Science (85)

cran: monitoR

Acoustic Template Detection in R
Papers that mentioned: 2

Very Likely Science (83)

cran: directlabels

Direct Labels for Multicolor Plots
Papers that mentioned: 2

Very Likely Science (95)

bioconductor: maskBAD

Masking probes with binding affinity differences
Papers that mentioned: 2

Very Likely Science (90)

cran: di

Deficit Index (DI)
Papers that mentioned: 2

Very Likely Science (83)

cran: dgof

Discrete Goodness-of-Fit Tests
Papers that mentioned: 2

Very Likely Science (75)

cran: SeqFeatR

A Tool to Associate FASTA Sequences and Features
Papers that mentioned: 2

Very Likely Science (83)

pypi: FlyBrainLab

FlyBrainLab User-side Backend
Papers that mentioned: 2

Very Likely Science (65)

pypi: BigJob

P* Pilot-Job Implementation based on SAGA-Python
Papers that mentioned: 2

Very Likely Science (100)

cran: mlogitBMA

Bayesian Model Averaging for Multinomial Logit Models
Papers that mentioned: 2

Very Likely Science (93)

cran: mlmmm

ML estimation under multivariate linear mixed models with missing values
Papers that mentioned: 2

Very Likely Science (93)

pypi: fnr

A command line utility to find & replace text.
Papers that mentioned: 2

Likely Science (40)

pypi: environments

Blackbox environment interface and implementations for autonomous exploration of sensorimotor spaces
Papers that mentioned: 2

Very Likely Science (80)

pypi: Chapman

Actor-based job queue
Papers that mentioned: 2

Very Likely Science (65)

cran: mixture

Mixture Models for Clustering and Classification
Papers that mentioned: 2

Very Likely Science (75)

pypi: cinfony

cinfony: a common API to several cheminformatics toolkits
Papers that mentioned: 2

Very Likely Science (80)

cran: phonTools

Tools for Phonetic and Acoustic Analyses
Papers that mentioned: 2

Very Likely Science (83)

pypi: clamp

Papers that mentioned: 2

Very Likely Science (65)

pypi: cld

Tool to manage Kubernetes clusters and helm charts across multiple AWS accounts and clusters
Papers that mentioned: 2

Very Likely Science (65)

cran: MixedPsy

Statistical Tools for the Analysis of Psychophysical Data
Papers that mentioned: 2

Very Likely Science (85)

cran: DCEM

Clustering Big Data using Expectation Maximization Star (EM*) Algorithm
Papers that mentioned: 2

Very Likely Science (100)

cran: miscF

Miscellaneous Functions
Papers that mentioned: 2

Very Likely Science (75)

pypi: regions

Astropy coordinated package for region handling
Papers that mentioned: 2

Very Likely Science (100)

pypi: enricher

To enrich urls for all companies
Papers that mentioned: 2

Very Likely Science (65)

pypi: biobeam

GPU accelerated light propagation tools
Papers that mentioned: 2

Very Likely Science (85)

pypi: BBN

Big Bang Nucleosynthesis
Papers that mentioned: 2

Very Likely Science (65)

cran: microbial

Do 16s Data Analysis and Generate Figures
Papers that mentioned: 2

Very Likely Science (85)

cran: miCoPTCM

Promotion Time Cure Model with Mis-Measured Covariates
Papers that mentioned: 2

Very Likely Science (75)

pypi: Akvo

Surface nuclear magnetic resonance workbench
Papers that mentioned: 2

Very Likely Science (65)

pypi: fac

a GUI project for calculating the factorial of the number you input
Papers that mentioned: 2

Very Likely Science (65)

cran: CSTE

Covariate Specific Treatment Effect (CSTE) Curve
Papers that mentioned: 2

Very Likely Science (83)

pypi: Baubles

Papers that mentioned: 2

Very Likely Science (65)

pypi: EoN

Epidemics on Networks
Papers that mentioned: 2

Very Likely Science (100)

cran: crayon

Colored Terminal Output
Papers that mentioned: 2

Very Likely Science (95)

cran: MGMM

Missingness Aware Gaussian Mixture Models
Papers that mentioned: 2

Very Likely Science (83)