Packages with Software Mentions in Scientific Papers

A set of helper functions to make working with spatial data in open source tools easier. This package is maintained by Earth Lab and was originally designed to support the earth analytics education program.
Papers that mentioned: 1

Very Likely Science (100)

pypi: csh

A collection of utilities for interacting with CSH services.
Papers that mentioned: 1

Very Likely Science (65)

pypi: SPLICE-q

SPLICE-q is a fast and user-friendly Python tool for genome-wide SPLICing Efficiency quantification
Papers that mentioned: 1

Very Likely Science (65)

pypi: staccato

Twitter API wrapper for python 3
Papers that mentioned: 1

Likely Science (40)

pypi: Fiume

A Bittorrent client for single-file torrents.
Papers that mentioned: 1

Very Likely Science (65)

cran: subscore

Computing Subscores in Classical Test Theory and Item Response Theory
Papers that mentioned: 1

Very Likely Science (83)

cran: SubVis

Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices
Papers that mentioned: 1

Very Likely Science (83)

cran: supcluster

Supervised Cluster Analysis
Papers that mentioned: 1

Very Likely Science (93)

pypi: lulz

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

pypi: lum

fly.
Papers that mentioned: 1

Very Likely Science (65)

pypi: micom

Microbial community modeling based on cobrapy.
Papers that mentioned: 1

Very Likely Science (100)

cran: restriktor

Restricted Statistical Estimation and Inference for Linear Models
Papers that mentioned: 1

Very Likely Science (85)

cran: RFGLS

Rapid Feasible Generalized Least Squares
Papers that mentioned: 1

Very Likely Science (75)

pypi: lodash

python implementation for lodash
Papers that mentioned: 1

Very Likely Science (65)

pypi: lollipop

Data serialization and validation library
Papers that mentioned: 1

Very Likely Science (65)

pypi: ciri

Python Schema Library
Papers that mentioned: 1

Very Likely Science (65)

pypi: mafs

Quickly conjure up virtual fileysystems
Papers that mentioned: 1

Very Likely Science (65)

pypi: submission

Takes algorithm, train, test, X variables, Y variables, column names required for submission and name of submission file as input and produces an output csv for submitting in the competition.
Papers that mentioned: 1

Very Likely Science (75)

cran: phytotools

Phytoplankton Production Tools
Papers that mentioned: 1

Very Likely Science (75)

pypi: lizard

A code analyzer without caring the C/C++ header files. It works with Java, C/C++, JavaScript, Python, Ruby, Swift, Objective C. Metrics includes cyclomatic complexity number etc.
Papers that mentioned: 1

Very Likely Science (85)

pypi: mgl

Papers that mentioned: 1

Very Likely Science (65)

pypi: lists

some functions for list
Papers that mentioned: 1

Very Likely Science (65)

pypi: threads

UNKNOWN
Papers that mentioned: 1

Likely Science (40)

cran: RFOC

Graphics for Spherical Distributions and Earthquake Focal Mechanisms
Papers that mentioned: 1

Very Likely Science (93)

pypi: jex

JSON/YAML interactive explorer - no JQ
Papers that mentioned: 1

Very Likely Science (65)

pypi: microrheology

A collection of methods to analyse particle trajectories
Papers that mentioned: 1

Very Likely Science (65)

pypi: tunel

commander and viewer to tunnel commands for HPC
Papers that mentioned: 1

Very Likely Science (80)

pypi: miepython

Mie scattering of a plane wave by a sphere
Papers that mentioned: 1

Very Likely Science (100)

pypi: torchtext

Text utilities, models, transforms, and datasets for PyTorch.
Papers that mentioned: 1

Very Likely Science (100)

pypi: touchstone

IoC framework driven by annotations and type hints
Papers that mentioned: 1

Very Likely Science (65)

cran: ri

R package for performing randomization-based inference for experiments
Papers that mentioned: 1

Very Likely Science (85)

pypi: minke

Minke is a Python package to produce Mock Data Challenge data sets for LIGO interferometers.
Papers that mentioned: 1

Very Likely Science (100)

pypi: libsm3

Papers that mentioned: 1

Very Likely Science (65)

pypi: libp2p

libp2p implementation written in python
Papers that mentioned: 1

Very Likely Science (100)

cran: swCRTdesign

Stepped Wedge Cluster Randomized Trial (SW CRT) Design
Papers that mentioned: 1

Very Likely Science (83)

pypi: minorminer

heuristic algorithm to find graph minor embeddings
Papers that mentioned: 1

Very Likely Science (81)

cran: symbolicDA

Analysis of Symbolic Data
Papers that mentioned: 1

Very Likely Science (85)

pypi: toxin

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

cran: rinat

Access 'iNaturalist' Data Through APIs
Papers that mentioned: 1

Likely Science (50)

pypi: libDetXR

(git:638683e) Detector X-Ray python Library
Papers that mentioned: 1

Very Likely Science (65)

pypi: libel

Scandalous utility functions and classes for Python.
Papers that mentioned: 1

Likely Science (40)

pypi: s2p

Satellite Stereo Pipeline.
Papers that mentioned: 1

Very Likely Science (100)

pypi: legato

Papers that mentioned: 1

Unlikely Science (0)

pypi: mints

Clean and elegant CLI development kit
Papers that mentioned: 1

Very Likely Science (75)

pypi: manipulation

MIT 6.421 - Robotic Manipulation
Papers that mentioned: 1

Very Likely Science (65)

pypi: cividis

Register `cividis` with matplotlib, a color map optimized for color vision deficiency, as published in Nuñez, et al. (2018), PLoS ONE 13(7): e0199239 .
Papers that mentioned: 1

Very Likely Science (65)

pypi: frags

Finding recombinations in reads
Papers that mentioned: 1

Very Likely Science (80)

pypi: Lectio

A Lectio API, used for accessing lectio.dk
Papers that mentioned: 1

Very Likely Science (65)

pypi: CladeCompare

Test for sites of contrasting conservation between gene clades.
Papers that mentioned: 1

Very Likely Science (100)

pypi: lane

Papers that mentioned: 1

Unlikely Science (0)

pypi: marathon

Marathon Client Library
Papers that mentioned: 1

Very Likely Science (65)

pypi: markers

A data labeling widget for use with Markers.ai
Papers that mentioned: 1

Very Likely Science (80)

pypi: transmap

API for Transmap Hub
Papers that mentioned: 1

Very Likely Science (65)

pypi: frog

Improved and extended turtle graphics like module
Papers that mentioned: 1

Very Likely Science (90)

cran: RJDBC

Provides Access to Databases Through the JDBC Interface
Papers that mentioned: 1

Likely Science (50)

pypi: Millet

A simple framework for building complex dialogue systems.
Papers that mentioned: 1

Very Likely Science (65)

pypi: kontroller

Python lib for kubernetes controllers
Papers that mentioned: 1

Very Likely Science (65)

cran: TEQR

Target Equivalence Range Design
Papers that mentioned: 1

Very Likely Science (75)

cran: Ternary

Create Ternary and Holdridge Plots
Papers that mentioned: 1

Very Likely Science (100)

pypi: MiniML

MiniML - a minimal machine learning API based on Apache MADlib and PostgreSQL
Papers that mentioned: 1

Very Likely Science (90)

cran: textreuse

Detect Text Reuse and Document Similarity
Papers that mentioned: 1

Very Likely Science (95)

pypi: kodak

HTTP server for uploading images and generating thumbnails
Papers that mentioned: 1

Very Likely Science (80)

pypi: optima

PyTorch Optimization Framework for Researchers
Papers that mentioned: 1

Very Likely Science (75)

pypi: correlate

Correlates two sets of data by matching
Papers that mentioned: 1

Very Likely Science (65)

pypi: mirror

Mirror for open source mirror site to sync files
Papers that mentioned: 1

Very Likely Science (65)

pypi: traffic

A toolbox for manipulating and analysing air traffic data
Papers that mentioned: 1

Very Likely Science (100)

pypi: fuchsia

Fuchsia reduces differential equations for Feynman master integrals to canonical form
Papers that mentioned: 1

Very Likely Science (90)

pypi: TranscriptSim

Package for Coaching Session Transcripts Similarity Calculations
Papers that mentioned: 1

Very Likely Science (65)

pypi: mk

mk
Papers that mentioned: 1

Very Likely Science (65)

pypi: MNSD

Papers that mentioned: 1

Very Likely Science (65)

pypi: mixer

Mixer -- Is a fixtures replacement. Supported Django ORM, SqlAlchemy ORM, Mongoengine ODM and custom python objects.
Papers that mentioned: 1

Very Likely Science (100)

pypi: Toolserver

Toolserver Framework for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: keras-rl

Deep Reinforcement Learning for Keras
Papers that mentioned: 1

Very Likely Science (100)

pypi: functools

Fast tools for functional programming
Papers that mentioned: 1

Very Likely Science (65)

pypi: saber

Saber: Sequence Annotator for Biomedical Entities and Relations
Papers that mentioned: 1

Very Likely Science (100)

pypi: modelbase

A package to build metabolic models
Papers that mentioned: 1

Very Likely Science (90)

pypi: fungi

A set of common utilities for iNotify (based on iNotify Simple) that makes it a little easier to work with
Papers that mentioned: 1

Very Likely Science (65)

pypi: jsonpickle

Python library for serializing any arbitrary object graph into JSON
Papers that mentioned: 1

Very Likely Science (100)

pypi: kakao

Papers that mentioned: 1

Unlikely Science (0)

pypi: jscatter

Combines dataArrays with attributes for fitting plotting and analysis including models for Xray and neutron scattering
Papers that mentioned: 1

Very Likely Science (90)

pypi: funniest

The funniest joke in the world
Papers that mentioned: 1

Very Likely Science (65)

pypi: JSNMF

Papers that mentioned: 1

Unlikely Science (0)

pypi: saddlebags

Saddlebags provides easy loading and access to the data elements of JSON/YAML configuration files.
Papers that mentioned: 1

Very Likely Science (65)

pypi: molsets

Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
Papers that mentioned: 1

Very Likely Science (75)

pypi: torchio

Tools for medical image processing with PyTorch
Papers that mentioned: 1

Very Likely Science (100)