Packages with Software Mentions in Scientific Papers

pypi: pycotools

A python toolbox for COPASI
Papers that mentioned: 1

pypi: pyconcepticon

programmatic curation of concepticon-data
Papers that mentioned: 1

pypi: fuzzer

Python wrapper for multiarch AFL
Papers that mentioned: 1

pypi: envipy

ENVI Python Tools
Papers that mentioned: 1

pypi: enum

Robust enumerated type support in Python.
Papers that mentioned: 1

pypi: fromage

FRamewOrk for Molecular AGgregate Excitations
Papers that mentioned: 1

pypi: pyefd

Python implementation of "Elliptic Fourier Features of a Closed Contour"
Papers that mentioned: 1

pypi: pyelectro

A Python library for analysis of electrophysiological data
Papers that mentioned: 1

pypi: PyGLtools

A genomic arithmetic tool for HiC or other paired-locus data
Papers that mentioned: 1

cran: riskCommunicator

G-Computation to Estimate Interpretable Epidemiological Effects
Papers that mentioned: 1

pypi: pyg

Python Package Manager
Papers that mentioned: 1

pypi: pyiron

pyiron - an integrated development environment (IDE) for computational materials science.
Papers that mentioned: 1

cran: RMKdiscrete

Sundry Discrete Probability Distributions
Papers that mentioned: 1

pypi: PyGEP

Gene Expression Programming for Python
Papers that mentioned: 1

cran: rlecuyer

R Interface to RNG with Multiple Streams
Papers that mentioned: 1

cran: RMTstat

Distributions, Statistics and Tests Derived from Random Matrix Theory
Papers that mentioned: 1

cran: rmapshaper

Client for 'mapshaper' for 'Geospatial' Operations
Papers that mentioned: 1

pypi: PyGithub

Use the full Github API v3
Papers that mentioned: 1

pypi: pygarrayimage

Allow numpy arrays as source of texture data for pyglet.
Papers that mentioned: 1

pypi: pygbif

Python client for GBIF
Papers that mentioned: 1

pypi: pygpc

A sensitivity and uncertainty analysis toolbox for Python
Papers that mentioned: 1

pypi: PyHum

Buscombe, D., 2017, Shallow water benthic imaging and substrate characterization using recreational-grade sidescan-sonar. ENVIRONMENTAL MODELLING & SOFTWARE 89, 1-18.
Papers that mentioned: 1

pypi: ent

library for creating arbitrary data structures
Papers that mentioned: 1

cran: Rlab

Functions and Datasets Required for ST370 Class
Papers that mentioned: 1

pypi: pylit

pylit: bidirectional text <-> code converter
Papers that mentioned: 1

pypi: pylj

Simple teaching tool for classical MD simulation
Papers that mentioned: 1

pypi: pyLoadBalancer

A load-balancer package for Python
Papers that mentioned: 1

cran: Rlof

R Parallel Implementation of Local Outlier Factor(LOF)
Papers that mentioned: 1

pypi: timeseries

Time series modelling and analysis
Papers that mentioned: 1

pypi: TKT

This project aims to provide multiple knowledge tracing models.
Papers that mentioned: 1

pypi: pyloudnorm

Implementation of ITU-R BS.1770-4 loudness algorithm in Python.
Papers that mentioned: 1

pypi: tips

A tips per day tracker and displayer
Papers that mentioned: 1

pypi: EmulsiPred

A package to predict emulsifying potential of peptides
Papers that mentioned: 1

pypi: viewlog

terminal git log browser
Papers that mentioned: 1

cran: ridigbio

Interface to the iDigBio Data API
Papers that mentioned: 1

pypi: pymagnitude

A fast, efficient universal vector embedding utility package.
Papers that mentioned: 1

cran: RKEEL

Using 'KEEL' in R Code
Papers that mentioned: 1

pypi: tina

TINA Is Not Arif: A tool for tagging chef cookbooks and their dependencies.
Papers that mentioned: 1

cran: rLiDAR

LiDAR Data Processing and Visualization
Papers that mentioned: 1

pypi: stud

Package management utilities
Papers that mentioned: 1

pypi: tinc

TINC python module
Papers that mentioned: 1

pypi: pyMCR

Multivariate Curve Resolution in Python
Papers that mentioned: 1

pypi: pymer

pymer: Pythonic fast k-mer counting routines
Papers that mentioned: 1

pypi: tinfo

Console extension to tmux
Papers that mentioned: 1

pypi: pymer4

pymer4: all the convenience of lme4 in python
Papers that mentioned: 1

pypi: pymesh

Library for manipulating (Translate, Rotate and Scale) 3D data using numpy.
Papers that mentioned: 1

pypi: pymia

A Python package for data handling and evaluation in deep learning-based medical image analysis.
Papers that mentioned: 1

pypi: stt

A library for doing speech recognition using a Coqui STT model
Papers that mentioned: 1

pypi: forests

Variations on Random Forests for classification / regression
Papers that mentioned: 1

pypi: toil-cwl-runner

Pipeline management software for clusters using CWL.
Papers that mentioned: 1

pypi: emphasis

Emphatic debug prints
Papers that mentioned: 1

pypi: forward

Tool for gene-based phenomic experiments using cohorts.
Papers that mentioned: 1

pypi: foot

Fetches a list of URLs and silly walks through each site to gather information.
Papers that mentioned: 1

pypi: vp

Markup Text Editor
Papers that mentioned: 1

pypi: FoneAstra

Django package necessary for running a FoneAstra server.
Papers that mentioned: 1

pypi: tomoscan

"utilitary to access tomography data at esrf"
Papers that mentioned: 1

pypi: tomy

Bunch of useful python codes
Papers that mentioned: 1

pypi: FortyTwo

This is the module containing 1m0r74l17y's stuff.
Papers that mentioned: 1

pypi: PyODE

Python wrapper for the Open Dynamics Engine
Papers that mentioned: 1

pypi: vm

version manager manages versions and patches files
Papers that mentioned: 1

pypi: pyMosaic

MOlecular SimulAtion Interchange Conventions
Papers that mentioned: 1

pypi: fqfa

A lightweight Python library for handling FASTQ and FASTA files.
Papers that mentioned: 1

pypi: Pymote

A high-level Python library for simulation of distributed algorithms.
Papers that mentioned: 1

pypi: franz

Event broker built on top of kafka and rabbitmq; used to handle micro services message exchange.
Papers that mentioned: 1

pypi: pymp

A small package of medical physics toys
Papers that mentioned: 1

pypi: pyMPI

MPI bindings for Python! Brings distributed parallel programming to Python from small SMP to huge clusters.
Papers that mentioned: 1

pypi: pympi-ling

A python module for processing ELAN and Praat annotation files
Papers that mentioned: 1

pypi: empath

A tool for text analysis
Papers that mentioned: 1

pypi: pyradiobiology

pyradiobiology is a package for radiobiological modeling (TCP, NTCP, EUD, gEUD) with Python.
Papers that mentioned: 1

pypi: pyramid

The Pyramid Web Framework, a Pylons project
Papers that mentioned: 1

pypi: pyramid-arima

Python's forecast::auto.arima equivalent
Papers that mentioned: 1

pypi: emcore

Python module to access functionality in the emcore library
Papers that mentioned: 1

pypi: PyRat

Python ray tracing
Papers that mentioned: 1

pypi: Pytheas

Framework for a fetch-and-send daemon.
Papers that mentioned: 1

pypi: vpp

Python wrapper to vpp
Papers that mentioned: 1

pypi: pystackreg

Image registration tool (python implementation of the ImageJ/FIJI Plugin TurboReg/StackReg)
Papers that mentioned: 1

Pyreport makes notes out of a python script. It can run the script in a sandbox and capture its output. It allows for embedding RestructuredText or LaTeX comments in the code for literate programming and generates a report made of the literate comments, the code, pretty printed, and the output of the script (pyreport can capture pylab figures). This is useful for documentations, making tutorials, but also for sharing python-based calculations with colleagues.
Papers that mentioned: 1