Packages with Software Mentions in Scientific Papers

A library that includes a CLI designed to serve as a platform to collect and analyze data across a flexible set of tools and technologies.
Papers that mentioned: 1

Very Likely Science (100)

pypi: venti

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: RTopper

This package is designed to perform Gene Set Analysis across multiple genomic platforms
Papers that mentioned: 1

Very Likely Science (100)

pypi: celescope

Single Cell Analysis Pipelines
Papers that mentioned: 1

Very Likely Science (75)

pypi: geoip2

MaxMind GeoIP2 API
Papers that mentioned: 1

Very Likely Science (65)

pypi: vertices

Convert an obj with n vertices into one with p vertices
Papers that mentioned: 1

Very Likely Science (100)

pypi: GeoLocation

Papers that mentioned: 1

Very Likely Science (65)

pypi: princeton

My princeton package
Papers that mentioned: 1

Very Likely Science (65)

pypi: vf

VF: Validation Functions (for Python dicts.)
Papers that mentioned: 1

Very Likely Science (80)

bioconductor: RIPAT

Retroviral Integration Pattern Analysis Tool (RIPAT)
Papers that mentioned: 1

Very Likely Science (100)

pypi: docs

Turn your Python script into a report with inline figures.
Papers that mentioned: 1

Very Likely Science (65)

pypi: microbase

Papers that mentioned: 1

Very Likely Science (65)

cran: rqPen

Penalized Quantile Regression
Papers that mentioned: 1

Very Likely Science (100)

cran: rredis

Papers that mentioned: 1

Unlikely Science (0)

cran: RPostgres

C++ Interface to PostgreSQL
Papers that mentioned: 1

Very Likely Science (100)

pypi: Printrun

Host software for 3D printers
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: ribosomeProfilingQC

Ribosome Profiling Quality Control
Papers that mentioned: 1

Very Likely Science (100)

pypi: standardizer

Provides a simple way of standardising molecules as a prelude to e.g. molecular modelling exercises.
Papers that mentioned: 1

Very Likely Science (90)

pypi: processes

Papers that mentioned: 1

Very Likely Science (65)

pypi: cell2cell

TBD
Papers that mentioned: 1

Very Likely Science (80)

pypi: cellassign

A cell assigner for single cell.
Papers that mentioned: 1

Very Likely Science (85)

pypi: viax

Papers that mentioned: 1

Unlikely Science (0)

cran: RODM

R interface to Oracle Data Mining
Papers that mentioned: 1

Likely Science (45)

cran: rpact

Confirmatory Adaptive Clinical Trial Design and Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: prodigy

Papers that mentioned: 1

Unlikely Science (0)

cran: rockchalk

Regression Estimation and Presentation
Papers that mentioned: 1

Very Likely Science (93)

pypi: rstream

A python client for RabbitMQ Streams
Papers that mentioned: 1

Very Likely Science (65)

pypi: ProjectManager

Project management for data analysis projects.
Papers that mentioned: 1

Very Likely Science (75)

cran: PharmPow

Pharmacometric Power calculations for mixed study designs
Papers that mentioned: 1

Very Likely Science (75)

pypi: cells

Terminal cells tools
Papers that mentioned: 1

Very Likely Science (65)

cran: RobRSVD

Robust Regularized Singular Value Decomposition
Papers that mentioned: 1

Very Likely Science (75)

pypi: you

My next dumb thing.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: RepViz

Replicate oriented Visualization of a genomic region
Papers that mentioned: 1

Very Likely Science (100)

pypi: ProtParCon

ProtParCon - A framework for framework for processing molecular data and identifying parallel and convergent amino acid replacements.
Papers that mentioned: 1

Very Likely Science (90)

cran: RobStatTM

Robust Statistics: Theory and Methods
Papers that mentioned: 1

Very Likely Science (85)

pypi: GeneXpress

A unified set of analysis and visualization tools intended for gene expression studies in Python, and an interface to the R ExpressionSet.
Papers that mentioned: 1

Very Likely Science (75)

pypi: openrouteservice

Python client for requests to openrouteservice API services
Papers that mentioned: 1

Very Likely Science (75)

pypi: proteus

Library to access Tryton server as a client
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: REBET

The subREgion-based BurdEn Test (REBET)
Papers that mentioned: 1

Very Likely Science (75)

pypi: regius

regius - Python Handsome Web Framework
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: DrugVsDisease

Comparison of disease and drug profiles using Gene set Enrichment Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: bioc

bioc - Processing BioC, Brat, and PubTator with Python.
Papers that mentioned: 1

Very Likely Science (100)

pypi: fabric

High level SSH command execution
Papers that mentioned: 1

Very Likely Science (100)

pypi: hyperframe

HTTP/2 framing layer for Python
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: DominoEffect

Identification and Annotation of Protein Hotspot Residues
Papers that mentioned: 1

Very Likely Science (90)

cran: BayesPostEst

Generate Postestimation Quantities for Bayesian MCMC Estimation
Papers that mentioned: 1

Very Likely Science (100)

pypi: cog

Containers for machine learning
Papers that mentioned: 1

Very Likely Science (75)

cran: ggOceanMaps

Plot Data on Oceanographic Maps using 'ggplot2'
Papers that mentioned: 1

Very Likely Science (100)

cran: pln

Polytomous Logit-Normit (Graded Logistic) Model Estimation
Papers that mentioned: 1

Very Likely Science (75)

cran: PLIS

Multiplicity Control using Pooled LIS Statistic
Papers that mentioned: 1

Very Likely Science (75)

pypi: enzo

A neural network library designed from scratch.
Papers that mentioned: 1

Very Likely Science (90)

pypi: clusterX

CELL (aka clusterX) is a python package for building Cluster Expansion models of simple and complex alloys and performing thermodynamical analyses of materials.
Papers that mentioned: 1

Very Likely Science (65)