Packages with Software Mentions in Scientific Papers

an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
Papers that mentioned: 1

Likely Science (45)

cran: BOIN

Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
Papers that mentioned: 1

Very Likely Science (85)

pypi: GeoIP

MaxMind GeoIP Legacy Database - Python API
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: slalom

Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data
Papers that mentioned: 1

Very Likely Science (100)

cran: blaster

Native R Implementation of an Efficient BLAST-Like Algorithm
Papers that mentioned: 1

Very Likely Science (100)

pypi: POPO

Papers that mentioned: 1

Unlikely Science (0)

pypi: rspec

Simple Raman spectrum composition analysis.
Papers that mentioned: 1

Very Likely Science (90)

pypi: practice

Sorry,This is practice
Papers that mentioned: 1

Very Likely Science (65)

pypi: VEnCode

Package to get VEnCodes as in Macedo and Gontijo, 2019
Papers that mentioned: 1

Very Likely Science (75)

pypi: aes

A simple tool for AES(Advanced Encryption Standard)
Papers that mentioned: 1

Very Likely Science (65)

pypi: celescope

Single Cell Analysis Pipelines
Papers that mentioned: 1

Very Likely Science (75)

pypi: geoip2

MaxMind GeoIP2 API
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: SigCheck

Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata
Papers that mentioned: 1

Very Likely Science (90)

pypi: vertices

Convert an obj with n vertices into one with p vertices
Papers that mentioned: 1

Very Likely Science (100)

cran: trustOptim

Trust Region Optimization for Nonlinear Functions with Sparse Hessians
Papers that mentioned: 1

Very Likely Science (100)

pypi: viax

Papers that mentioned: 1

Unlikely Science (0)

cran: RODM

R interface to Oracle Data Mining
Papers that mentioned: 1

Likely Science (45)

cran: rpact

Confirmatory Adaptive Clinical Trial Design and Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: prodigy

Papers that mentioned: 1

Unlikely Science (0)

cran: IPDfromKM

Map Digitized Survival Curves Back to Individual Patient Data
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: seqCNA

Copy number analysis of high-throughput sequencing cancer data
Papers that mentioned: 1

Very Likely Science (75)

pypi: GeneXpress

A unified set of analysis and visualization tools intended for gene expression studies in Python, and an interface to the R ExpressionSet.
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: seq2pathway

a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data
Papers that mentioned: 1

Very Likely Science (93)

cran: bit64

A S3 Class for Vectors of 64bit Integers
Papers that mentioned: 1

Very Likely Science (75)

pypi: proteus

Library to access Tryton server as a client
Papers that mentioned: 1

Very Likely Science (65)

pypi: babar

Elephants never forget.
Papers that mentioned: 1

Very Likely Science (65)

pypi: gdecomp

Gaussian Decompostion of a LiDAR Waveform
Papers that mentioned: 1

Very Likely Science (80)

pypi: youtube

Papers that mentioned: 1

Unlikely Science (0)

pypi: gather

A gatherer
Papers that mentioned: 1

Very Likely Science (65)

pypi: Gavagai

A Gavagai API helper library.
Papers that mentioned: 1

Very Likely Science (80)

pypi: FLiP

F L i P : Logical Framework in Python
Papers that mentioned: 1

Very Likely Science (80)

pypi: Drum

A Reddit / Hacker News clone for Django.
Papers that mentioned: 1

Very Likely Science (65)

pypi: rtdpy

Python package for residence time distribution analysis
Papers that mentioned: 1

Very Likely Science (90)

pypi: censys

An easy-to-use and lightweight API wrapper for Censys APIs (censys.io).
Papers that mentioned: 1

Very Likely Science (100)

pypi: PyAutoGUI

PyAutoGUI lets Python control the mouse and keyboard, and other GUI automation tasks. For Windows, macOS, and Linux, on Python 3 and 2.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pybeach

A Python package for locating the dune toe on cross-shore beach profile transects.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: Sconify

A toolkit for performing KNN-based statistics for flow and mass cytometry data
Papers that mentioned: 1

Very Likely Science (100)

cran: Biolinv

Modelling and Forecasting Biological Invasions
Papers that mentioned: 1

Very Likely Science (85)

pypi: fuzzer

Python wrapper for multiarch AFL
Papers that mentioned: 1

Very Likely Science (65)

pypi: mgl

Papers that mentioned: 1

Very Likely Science (65)

cran: Biocomb

Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: reda

Reproducible Electrical Data Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: bigleaf

Physical and Physiological Ecosystem Properties from Eddy Covariance Data
Papers that mentioned: 1

Very Likely Science (100)

cran: bgmm

Gaussian Mixture Modeling Algorithms and the Belief-Based Mixture Modeling
Papers that mentioned: 1

Very Likely Science (85)

cran: riskCommunicator

G-Computation to Estimate Interpretable Epidemiological Effects
Papers that mentioned: 1

Likely Science (50)

pypi: cerebra

finds mutants in your scRNA-seq experiment
Papers that mentioned: 1

Very Likely Science (90)

pypi: fromage

FRamewOrk for Molecular AGgregate Excitations
Papers that mentioned: 1

Very Likely Science (75)

pypi: frogs

Papers that mentioned: 1

Very Likely Science (65)

cran: segclust2d

Bivariate Segmentation/Clustering Methods and Tools
Papers that mentioned: 1

Very Likely Science (75)

pypi: pyedf

Papers that mentioned: 1

Unlikely Science (0)

cran: RNAsmc

RNA Secondary Structure Module Mining, Comparison and Plotting
Papers that mentioned: 1

Very Likely Science (85)

pypi: pyhf

pure-Python HistFactory implementation with tensors and autodiff
Papers that mentioned: 1

Very Likely Science (100)

pypi: cf-python

A CF-compliant earth science data analysis library
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: RNAinteract

Estimate Pairwise Interactions from multidimensional features
Papers that mentioned: 1

Very Likely Science (90)

pypi: pyhrf

Analysis of fMRI data based on the study of hemodynamics
Papers that mentioned: 1

Very Likely Science (65)

pypi: rtools

utilities to ease manipulation of R packages using rpy2.
Papers that mentioned: 1

Very Likely Science (80)

cran: netstat

Retrieve Network Statistics Including Available TCP Ports
Papers that mentioned: 1

Very Likely Science (85)

pypi: flower

Celery Flower
Papers that mentioned: 1

Very Likely Science (85)

pypi: timsdata

Papers that mentioned: 1

Unlikely Science (0)

pypi: tims

Description.
Papers that mentioned: 1

Very Likely Science (80)

bioconductor: rhdf5client

Access HDF5 content from HDF Scalable Data Service
Papers that mentioned: 1

Very Likely Science (83)

pypi: lists

some functions for list
Papers that mentioned: 1

Very Likely Science (65)

pypi: equivalence

Equivalence relations
Papers that mentioned: 1

Very Likely Science (65)

pypi: aequitas

The bias and fairness audit toolkit.
Papers that mentioned: 1

Very Likely Science (100)

pypi: forests

Variations on Random Forests for classification / regression
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: RegEnrich

Gene regulator enrichment analysis
Papers that mentioned: 1

Very Likely Science (100)