Packages with Software Mentions in Scientific Papers

cran: nlnet

Nonlinear Network, Clustering, and Variable Selection Based on DCOL
Papers that mentioned: 1

Very Likely Science (93)

pypi: protcomp

Python package to reconstruct protein complexes from protein pairwise interactions.
Papers that mentioned: 1

Very Likely Science (65)

pypi: utest

utest is a tiny unit testing library for Python.
Papers that mentioned: 1

Very Likely Science (65)

pypi: scribe

Log like it's going out of style
Papers that mentioned: 1

Very Likely Science (65)

pypi: DEERPREdict

A package for DEER and PRE predictions based on molecular dynamics ensembles. Can be installed with pip.
Papers that mentioned: 1

Very Likely Science (100)

pypi: proton

Proton Template Engine
Papers that mentioned: 1

Very Likely Science (65)

pypi: beatbox

A Python library for querying/updating Saleforce.com data via SOAP API
Papers that mentioned: 1

Possibly Science (35)

pypi: protosearch

Software for enumerating crystal structure prototypes to by used for active learning exploration with DFT and machine learning.
Papers that mentioned: 1

Very Likely Science (90)

pypi: prov

A library for W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)
Papers that mentioned: 1

Very Likely Science (100)

pypi: beat

'Bayesian Earthquake Analysis Tool'
Papers that mentioned: 1

Very Likely Science (90)

pypi: pseq

A framework for parallel processing of sequences.
Papers that mentioned: 1

Very Likely Science (85)

pypi: DeepSpectrum

Papers that mentioned: 1

Very Likely Science (80)

cran: NHPoisson

Modelling and Validation of Non Homogeneous Poisson Processes
Papers that mentioned: 1

Very Likely Science (85)

pypi: deepposekit

a toolkit for pose estimation using deep learning
Papers that mentioned: 1

Very Likely Science (100)

pypi: ps_mem

A utility to report core memory usage per program
Papers that mentioned: 1

Likely Science (40)

pypi: PSNN

Python Simple Neural Network - PSNN is python3 lib for machine learning
Papers that mentioned: 1

Very Likely Science (75)

pypi: UTide

Python distribution of the MatLab package UTide
Papers that mentioned: 1

Very Likely Science (100)

pypi: PathCORE-T

Python 3 implementation of PathCORE-T analysis methods
Papers that mentioned: 1

Very Likely Science (100)

pypi: psychometrics

psychometrics is a library for psychological measurement experiment
Papers that mentioned: 1

Very Likely Science (75)

pypi: bam2fasta

tool for converting a bam file to fastas
Papers that mentioned: 1

Very Likely Science (65)

pypi: PsychRNN

Easy-to-use package for the modeling and analysis of neural network dynamics, directed towards cognitive neuroscientists.
Papers that mentioned: 1

Very Likely Science (100)

pypi: bal

A framework for analyzing and manipulating binary data
Papers that mentioned: 1

Very Likely Science (65)

pypi: vidstab

Video Stabilization using OpenCV
Papers that mentioned: 1

Very Likely Science (65)

pypi: youtil

Module to get youtube details
Papers that mentioned: 1

Very Likely Science (65)

pypi: PsyLab

PsyLab: Psychophysics Lab
Papers that mentioned: 1

Very Likely Science (100)

pypi: pt

Papers that mentioned: 1

Very Likely Science (65)

pypi: cpplint

Automated checker to ensure C++ files follow Google's style guide
Papers that mentioned: 1

Very Likely Science (100)

pypi: ptemcee

Parallel-tempered emcee.
Papers that mentioned: 1

Very Likely Science (86)

pypi: pter

Console UI to manage your todo.txt file(s).
Papers that mentioned: 1

Likely Science (40)

cran: bipartiteD3

Interactive Bipartite Graphs
Papers that mentioned: 1

Very Likely Science (75)

pypi: publish

Publish python package to PyPI and Github
Papers that mentioned: 1

Very Likely Science (65)

pypi: backtrack

Simple logging in Python 3.
Papers that mentioned: 1

Very Likely Science (65)

pypi: stPlus

stPlus: reference-based enhancement of spatial transcriptomics
Papers that mentioned: 1

Very Likely Science (100)

pypi: bagpipe

Papers that mentioned: 1

Very Likely Science (65)

pypi: pulse2percept

A Python-based simulation framework for bionic vision
Papers that mentioned: 1

Very Likely Science (100)

pypi: axiom

An in-process object-relational database
Papers that mentioned: 1

Very Likely Science (100)

pypi: omadb

Client to the OMA browser, using the REST API.
Papers that mentioned: 1

Very Likely Science (100)

pypi: pxrd

PC-Axis PX file reader
Papers that mentioned: 1

Very Likely Science (65)

pypi: atomap

Library for analysing atomic resolution images
Papers that mentioned: 1

Very Likely Science (80)

pypi: msaview

A set of Jupyter widgets useful for analyzing biological data.
Papers that mentioned: 1

Very Likely Science (100)

pypi: deeplc

DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
Papers that mentioned: 1

Very Likely Science (100)

pypi: DeepGraph

Analyze Data with Pandas-based Networks.
Papers that mentioned: 1

Very Likely Science (100)

pypi: soma-workflow

Soma-Workflow. A unified and simple interface to parallel computing resource
Papers that mentioned: 1

Very Likely Science (80)

pypi: arff

Python package for reading and writing Weka arff files
Papers that mentioned: 1

Very Likely Science (65)

cran: clustMixType

k-Prototypes Clustering for Mixed Variable-Type Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: py2bit

A package for accessing 2bit files using lib2bit
Papers that mentioned: 1

Very Likely Science (80)

pypi: Archiver

Manage files based on their SHA1 hashes
Papers that mentioned: 1

Very Likely Science (65)

pypi: son

Tools to read and write .son files
Papers that mentioned: 1

Very Likely Science (65)

pyahocorasick is a fast and memory efficient library for exact or approximate multi-pattern string search. With the ``ahocorasick.Automaton`` class, you can find multiple key string occurrences at once in some input text. You can use it as a plain dict-like Trie or convert a Trie to an automaton for efficient Aho-Corasick search. And pickle to disk for easy reuse of large automatons. Implemented in C and tested on Python 3.6+. Works on Linux, macOS and Windows. BSD-3-Cause license.
Papers that mentioned: 1

Very Likely Science (85)

pypi: py-aiger

A python library for manipulating sequential and-inverter gates.
Papers that mentioned: 1

Very Likely Science (100)

pypi: strand

Easy creation of non-blocking tasks
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyasp

A convenience wrapper for the ASP tools gringo, gringo4 and clasp.
Papers that mentioned: 1

Very Likely Science (65)

pypi: PyAstronomy

A collection of astronomy related tools for Python.
Papers that mentioned: 1

Very Likely Science (100)

pypi: DeepGenerator

Sentence Sequence Transduction Library (Seq to Seq) for text generation using sequential generative Vanilla RNN using numpy.
Papers that mentioned: 1

Very Likely Science (80)

pypi: deepee

Fast (and cheeky) differentially private gradient-based optimisation in PyTorch
Papers that mentioned: 1

Very Likely Science (75)

pypi: apriori

implimention of apriori in python
Papers that mentioned: 1

Very Likely Science (65)

pypi: pybloomfiltermmap

A Bloom filter (bloomfilter) for Python built on mmap
Papers that mentioned: 1

Very Likely Science (85)

pypi: PyBluez

Bluetooth Python extension module
Papers that mentioned: 1

Very Likely Science (65)

pypi: sound

Fast, out-of-core access to disk-based sound data and read/write audio files.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pybromo

Simulator for confocal single-molecule fluorescence experiments.
Papers that mentioned: 1

Very Likely Science (100)

pypi: PyCausality

Extended significance testing to linear TE calculations
Papers that mentioned: 1

Very Likely Science (85)

pypi: anonymous

A python library with tools.
Papers that mentioned: 1

Very Likely Science (65)

pypi: sounddevice

Play and Record Sound with Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: Pycco

A Python port of Docco: the original quick-and-dirty, hundred-line-long, literate-programming-style documentation generator.
Papers that mentioned: 1

Very Likely Science (85)

pypi: gorilla

Convenient approach to monkey patching
Papers that mentioned: 1

Very Likely Science (65)

pypi: PyCEGO

C++->python wrapper of C++11 Evolutionary Global Optimization (CEGO)
Papers that mentioned: 1

Very Likely Science (75)

pypi: z3

Backup ZFS snapshots to S3
Papers that mentioned: 1

Very Likely Science (75)

pypi: pycellbase

Python client for CellBase
Papers that mentioned: 1

Very Likely Science (100)

cran: CircOutlier

Detection of Outliers in Circular-Circular Regression
Papers that mentioned: 1

Very Likely Science (85)

pypi: annoy

Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk.
Papers that mentioned: 1

Very Likely Science (100)

pypi: pycldf

A python library to read and write CLDF datasets
Papers that mentioned: 1

Very Likely Science (95)

pypi: pyclics

creating colexification networks from lexical data
Papers that mentioned: 1

Very Likely Science (100)

pypi: soundex

Soundex algorith implementation for English and Indian languages
Papers that mentioned: 1

Very Likely Science (100)

pypi: SourceWatch

A library to query information of Goldsrc and Source servers.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyconcepticon

programmatic curation of concepticon-data
Papers that mentioned: 1

Very Likely Science (90)

pypi: DeepClaw

a reconfigurable benchmark of robotic hardware and task hierarchy for robot learning
Papers that mentioned: 1

Very Likely Science (100)

pypi: deepDegron

deepDegron
Papers that mentioned: 1

Very Likely Science (100)

pypi: PyFFI

Processing block structured binary files.
Papers that mentioned: 1

Very Likely Science (100)

pypi: screed

a Python library for loading FASTA and FASTQ sequences
Papers that mentioned: 1

Very Likely Science (100)

pypi: sp3

Download and interpolate precise satellite ephemeris (SP3)
Papers that mentioned: 1

Very Likely Science (75)

pypi: pycotools

A python toolbox for COPASI
Papers that mentioned: 1

Very Likely Science (100)

pypi: spa

A Python micro framework for REST APIs and single-page-applications.
Papers that mentioned: 1

Very Likely Science (65)

pypi: grit

Grit is a simple git repo manager with limited remote object proxying, a http back-end and simple cli.
Papers that mentioned: 1

Very Likely Science (65)

cran: msgps

Degrees of Freedom of Elastic Net, Adaptive Lasso and Generalized Elastic Net
Papers that mentioned: 1

Very Likely Science (75)

pypi: pydensecrf

A python interface to Philipp Krähenbühl's fully-connected (dense) CRF code.
Papers that mentioned: 1

Very Likely Science (100)

cran: cifti

Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files
Papers that mentioned: 1

Very Likely Science (75)

pypi: spack

A module for analyzing packings of 2D and 3D spheres
Papers that mentioned: 1

Very Likely Science (80)

cran: rdataretriever

R Interface to the Data Retriever
Papers that mentioned: 1

Very Likely Science (85)

pypi: cpk

Toolkit that standardize the way code in a project is structured and packaged for maximum portability, readability and maintainability.
Papers that mentioned: 1

Very Likely Science (100)