Packages with Software Mentions in Scientific Papers

bioconductor: KBoost

Inference of gene regulatory networks from gene expression data
Papers that mentioned: 1

Very Likely Science (100)

cran: hilldiv

Integral Analysis of Diversity Based on Hill Numbers
Papers that mentioned: 1

Very Likely Science (100)

Festival management application: Tickets E-Commerce, Tickets validation on Lobby (Web, Paper, Guest, Local Purchase) and Sells on Wristband/Card (Beverage, Food, Souvenir, etc).
Papers that mentioned: 1

Likely Science (40)

cran: gsbDesign

Group Sequential Bayes Design
Papers that mentioned: 1

Very Likely Science (75)

cran: gsalib

Utility Functions for 'GATK'
Papers that mentioned: 1

Very Likely Science (90)

cran: hitandrun

"Hit and Run" and "Shake and Bake" for Sampling Uniformly from Convex Shapes
Papers that mentioned: 1

Very Likely Science (77)

pypi: htsint

API and database for high-throughput sequencing analyses.
Papers that mentioned: 1

Very Likely Science (65)

pypi: fractal

对分形比较感兴趣，看pypi上没有相关库，自己撸着玩
Papers that mentioned: 1

Very Likely Science (65)

cran: nlsem

Fitting Structural Equation Mixture Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: bitarray

efficient arrays of booleans -- C extension
Papers that mentioned: 1

Very Likely Science (85)

cran: gridtext

Improved Text Rendering Support for 'Grid' Graphics
Papers that mentioned: 1

Very Likely Science (85)

pypi: birdseye

Graphical Python debugger which lets you easily view the values of all evaluated expressions
Papers that mentioned: 1

Very Likely Science (95)

pypi: ontoviz

A simple ontology and RDF visualization tool.
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: ImmuneSpaceR

A Thin Wrapper around the ImmuneSpace Data and Tools Portal
Papers that mentioned: 1

Very Likely Science (100)

pypi: bird

BIRD
Papers that mentioned: 1

Very Likely Science (80)

pypi: biotracks

Data package representation for cell migration tracking data
Papers that mentioned: 1

Very Likely Science (65)

cran: nlt

A Nondecimated Lifting Transform for Signal Denoising
Papers that mentioned: 1

Very Likely Science (75)

cran: IC2

Inequality and Concentration Indices and Curves
Papers that mentioned: 1

Very Likely Science (75)

cran: ICAOD

Optimal Designs for Nonlinear Statistical Models by Imperialist Competitive Algorithm (ICA)
Papers that mentioned: 1

Very Likely Science (85)

cran: DiagrammeRsvg

Export DiagrammeR Graphviz Graphs as SVG
Papers that mentioned: 1

Very Likely Science (70)

pypi: fplanck

Solve the Fokker-Planck equation in N dimensions
Papers that mentioned: 1

Very Likely Science (100)

cran: grf

Generalized Random Forests
Papers that mentioned: 1

Very Likely Science (100)

cran: GreedyEPL

Greedy Expected Posterior Loss
Papers that mentioned: 1

Very Likely Science (75)

cran: ICGE

Estimation of Number of Clusters and Identification of Atypical Units
Papers that mentioned: 1

Very Likely Science (75)

pypi: aggregation

Papers that mentioned: 1

Very Likely Science (65)

pypi: RepeatFS

File system providing reproducibility through provenance and automation
Papers that mentioned: 1

Very Likely Science (95)

cran: iFad

An integrative factor analysis model for drug-pathway association inference
Papers that mentioned: 1

Very Likely Science (85)

pypi: sts

STS - Smart Trading System
Papers that mentioned: 1

Very Likely Science (65)

pypi: struc

syntax wrapper for ctypes.Structure
Papers that mentioned: 1

Very Likely Science (65)

pypi: opx

OpenSwitch Development Tool
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: HPAanalyze

Retrieve and analyze data from the Human Protein Atlas
Papers that mentioned: 1

Very Likely Science (100)

cran: iglu

Interpreting Glucose Data from Continuous Glucose Monitors
Papers that mentioned: 1

Very Likely Science (100)

pypi: repertoire

Spaced repetition in plain text
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: HDTD

Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: GWENA

Pipeline for augmented co-expression analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: medic

A command line tool to manage a PubMed DB mirror.
Papers that mentioned: 1

Very Likely Science (100)

pypi: franklin

Retrieve scientific papers and manage associated citations.
Papers that mentioned: 1

Very Likely Science (95)

cran: imbalance

Preprocessing Algorithms for Imbalanced Datasets
Papers that mentioned: 1

Very Likely Science (87)

bioconductor: graper

Adaptive penalization in high-dimensional regression and classification with external covariates using variational Bayes
Papers that mentioned: 1

Very Likely Science (100)

cran: NMOF

Numerical Methods and Optimization in Finance
Papers that mentioned: 1

Very Likely Science (85)

cran: tuber

Client for the YouTube API
Papers that mentioned: 1

Very Likely Science (95)

pypi: hypergraph

Reversed mode second order automatic differentiation for python
Papers that mentioned: 1

Very Likely Science (65)

pypi: franz

Event broker built on top of kafka and rabbitmq; used to handle micro services message exchange.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: LineagePulse

Differential expression analysis and model fitting for single-cell RNA-seq data
Papers that mentioned: 1

Very Likely Science (100)

pypi: replace

multiple replace
Papers that mentioned: 1

Very Likely Science (65)

pypi: relationships

redis backed user relationships
Papers that mentioned: 1

Very Likely Science (65)

cran: nodbi

'NoSQL' Database Connector
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: LPEadj

A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.
Papers that mentioned: 1

Very Likely Science (100)

pypi: replication

A prototype object replication lib
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: GladiaTOX

R Package for Processing High Content Screening data
Papers that mentioned: 1

Very Likely Science (75)

cran: nodiv

Compares the Distribution of Sister Clades Through a Phylogeny
Papers that mentioned: 1

Very Likely Science (70)

pypi: bioread

Utilities to read BIOPAC AcqKnowledge files
Papers that mentioned: 1

Very Likely Science (100)

cran: gnorm

Generalized Normal/Exponential Power Distribution
Papers that mentioned: 1

Very Likely Science (75)

pypi: FRB

Federal Reserve Economic Data (FRED)
Papers that mentioned: 1

Very Likely Science (85)

pypi: forward

Tool for gene-based phenomic experiments using cohorts.
Papers that mentioned: 1

Very Likely Science (90)

pypi: editdistance

Fast implementation of the edit distance(Levenshtein distance)
Papers that mentioned: 1

Very Likely Science (75)

cran: noise

Estimation of Intrinsic and Extrinsic Noise from Single-Cell Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: frc

Library for computing Fourier Ring Correlation (FRC) curves and using them to determine image resolution.
Papers that mentioned: 1

Very Likely Science (100)

pypi: biopy-isatab

Python parser for ISAtab, a biological file format for experimental metadata
Papers that mentioned: 1

Very Likely Science (75)

pypi: FortyTwo

This is the module containing 1m0r74l17y's stuff.
Papers that mentioned: 1

Very Likely Science (65)

pypi: mediator

A library implements the Mediator pattern to make your code extensible
Papers that mentioned: 1

Very Likely Science (65)

pypi: epath

Easy path for python import/save/load process
Papers that mentioned: 1

Very Likely Science (65)

cran: glycanr

Tools for Analysing N-Glycan Data
Papers that mentioned: 1

Very Likely Science (91)

pypi: mediate

Middleware for every occasion
Papers that mentioned: 1

Very Likely Science (65)

pypi: Fortuna

High Performance Random Value Toolkit
Papers that mentioned: 1

Possibly Science (30)

pypi: ORG.asm

A de novo assembler dedicated to organelle genome assembling
Papers that mentioned: 1

Very Likely Science (80)

pypi: stroke

Utilities for & with strings.
Papers that mentioned: 1

Very Likely Science (65)

pypi: bioprinter

🖨️ Print pictures with living micro-organisms !
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: GeneTonic

Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: epc

EPC (RPC stack for Emacs Lisp) implementation in Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: biopipe

Pipeable commandline utilities for simple bioinformatics research.
Papers that mentioned: 1

Very Likely Science (95)

cran: glmmsr

Fit a Generalized Linear Mixed Model
Papers that mentioned: 1

Very Likely Science (75)

pypi: fred

St. Louis Federal Reserve FRED API
Papers that mentioned: 1

Very Likely Science (65)

pypi: biopandas

Machine Learning Library Extensions
Papers that mentioned: 1

Very Likely Science (100)

cran: tumgr

Tumor Growth Rate Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: reporting

patterns in reporting
Papers that mentioned: 1

Very Likely Science (65)

cran: nonmem2R

Loading NONMEM Output Files with Functions for Visual Predictive Checks (VPC) and Goodness of Fit (GOF) Plots
Papers that mentioned: 1

Very Likely Science (75)

pypi: BioMetaDB

Use biological data to generate SQL database schema
Papers that mentioned: 1

Very Likely Science (85)

pypi: reports

Quickly create HTML reports using a set of JINJA templates
Papers that mentioned: 1

Very Likely Science (80)

cran: Ghat

Quantifying Evolution and Selection on Complex Traits
Papers that mentioned: 1

Very Likely Science (75)

pypi: pathlib

Object-oriented filesystem paths
Papers that mentioned: 1

Very Likely Science (65)

cran: nopaco

Non-Parametric Concordance Coefficient
Papers that mentioned: 1

Very Likely Science (75)

pypi: rei

Python port of `re2` C++ library.
Papers that mentioned: 1

Very Likely Science (65)

cran: interpretR

Binary Classifier and Regression Model Interpretation Functions
Papers that mentioned: 1

Very Likely Science (60)

cran: tsibble

Tidy Temporal Data Frames and Tools
Papers that mentioned: 1

Very Likely Science (75)

pypi: synpy

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

pypi: elisp

Emacs Lisp parser
Papers that mentioned: 1

Very Likely Science (65)

pypi: form

Papers that mentioned: 1

Very Likely Science (65)

pypi: BioExp

Deep Learning model analysis toolbox
Papers that mentioned: 1

Very Likely Science (75)

pypi: BioDendro

a package to cluster metabolomics data and plot dendrograms
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: exomePeak2

Peak Calling and differential analysis for MeRIP-Seq
Papers that mentioned: 1

Very Likely Science (100)

pypi: bioconda2biocontainer

Tools to synchronize bioconda packages and versions with Biocontainer images
Papers that mentioned: 1

Very Likely Science (70)

cran: NORMT3

Evaluates Complex Erf, Erfc, Faddeeva, and Density of Sum of Gaussian and Student's t
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: epihet

Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data
Papers that mentioned: 1

Very Likely Science (100)

cran: MNLpred

Simulated Predicted Probabilities for Multinomial Logit Models
Papers that mentioned: 1

Very Likely Science (83)

pypi: eco

Python Eco is a bridge to the ECO(CoffeeScript Template) Compiler.
Papers that mentioned: 1

Very Likely Science (65)

pypi: mechanical

Mechanical Python Library
Papers that mentioned: 1

Very Likely Science (65)

cran: ggpolypath

Polygons with Holes for the Grammar of Graphics
Papers that mentioned: 1

Very Likely Science (85)

cran: nprobust

Nonparametric Robust Estimation and Inference Methods using Local Polynomial Regression and Kernel Density Estimation
Papers that mentioned: 1

Very Likely Science (93)

cran: IsoriX

Isoscape Computation and Inference of Spatial Origins using Mixed Models
Papers that mentioned: 1

Likely Science (50)