Packages with Software Mentions in Scientific Papers

cran: MDMAPR

Molecular Detection Mapping and Analysis Platform
Papers that mentioned: 1

Very Likely Science (85)

cran: bPeaks

an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
Papers that mentioned: 1

Likely Science (45)

cran: complexity

Calculate the Proportion of Permutations in Line with an Informative Hypothesis
Papers that mentioned: 1

Very Likely Science (75)

cran: COMPoissonReg

Conway-Maxwell Poisson (COM-Poisson) Regression
Papers that mentioned: 1

Very Likely Science (100)

pypi: ebus

ebus - Event bus
Papers that mentioned: 1

Very Likely Science (65)

cran: mdthemes

Markdown Themes for 'ggplot2'
Papers that mentioned: 1

Very Likely Science (75)

pypi: jpeglib

Python envelope for the popular C librarylibjpeg for handling JPEG files.
Papers that mentioned: 1

Very Likely Science (100)

cran: concordance

Product Concordance
Papers that mentioned: 1

Very Likely Science (100)

cran: Mega2R

Accessing and Processing a 'Mega2' Genetic Database
Papers that mentioned: 1

Very Likely Science (93)

pypi: squiggle

DNA Sequence Visualization for Humans.
Papers that mentioned: 1

Very Likely Science (100)

cran: ConSpline

Partial Linear Least-Squares Regression using Constrained Splines
Papers that mentioned: 1

Very Likely Science (93)

cran: contact

Creating Contact and Social Networks
Papers that mentioned: 1

Very Likely Science (100)

pypi: ae

Python accoustic emission tools
Papers that mentioned: 1

Very Likely Science (67)

bioconductor: sscore

S-Score Algorithm for Affymetrix Oligonucleotide Microarrays
Papers that mentioned: 1

Very Likely Science (100)

cran: nevada

Network-Valued Data Analysis
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: srnadiff

Finding differentially expressed unannotated genomic regions from RNA-seq data
Papers that mentioned: 1

Very Likely Science (100)

cran: metacart

Meta-CART: A Flexible Approach to Identify Moderators in Meta-Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: mcts

A simple package to allow users to run Monte Carlo Tree Search on any perfect information domain
Papers that mentioned: 1

Very Likely Science (100)

cran: SemNeT

Methods and Measures for Semantic Network Analysis
Papers that mentioned: 1

Very Likely Science (95)

pypi: squire

Watch a directory and run a command on changes
Papers that mentioned: 1

Very Likely Science (65)

cran: conting

Bayesian Analysis of Contingency Tables
Papers that mentioned: 1

Very Likely Science (85)

cran: Copula.surv

Analysis of Bivariate Survival Data Based on Copulas
Papers that mentioned: 1

Very Likely Science (85)

cran: metapower

Power Analysis for Meta-Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: MetaSubtract

Subtracting Summary Statistics of One or more Cohorts from Meta-GWAS Results
Papers that mentioned: 1

Very Likely Science (85)

cran: metatest

Fit and Test Metaregression Models
Papers that mentioned: 1

Very Likely Science (85)

cran: BOIN

Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
Papers that mentioned: 1

Very Likely Science (85)

cran: MethodCompare

Bias and Precision Plots
Papers that mentioned: 1

Very Likely Science (75)

pypi: fluopi

Module to manage and analyze time-lapse data obtained with fluopi equipment
Papers that mentioned: 1

Very Likely Science (100)

cran: MetGen

Stochastic Weather Generator
Papers that mentioned: 1

Very Likely Science (75)

pypi: bacolonyzer

Analyse timeseries of QFA images
Papers that mentioned: 1

Very Likely Science (80)

cran: nichevol

Tools for Ecological Niche Evolution Assessment Considering Uncertainty
Papers that mentioned: 1

Very Likely Science (95)

pypi: mcx

Express & compile probabilistic programs for performant inference on CPU & GPU. Powered by JAX.
Papers that mentioned: 1

Very Likely Science (65)

cran: nimbleEcology

Distributions for Ecological Models in 'nimble'
Papers that mentioned: 1

Very Likely Science (100)

pypi: 3t

Papers that mentioned: 1

Very Likely Science (65)

cran: bnma

Bayesian Network Meta-Analysis using 'JAGS'
Papers that mentioned: 1

Very Likely Science (85)

cran: CorrMixed

Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
Papers that mentioned: 1

Very Likely Science (85)

cran: NitrogenUptake2016

Data and Source Code From: Nitrogen Uptake and Allocation Estimates for Spartina Alterniflora and Distichlis Spicata
Papers that mentioned: 1

Very Likely Science (85)

pypi: ecalc

a simple Python-based calculator for network engineers/researchers
Papers that mentioned: 1

Very Likely Science (75)

cran: corTest

Robust Tests for Equal Correlation
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: slalom

Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data
Papers that mentioned: 1

Very Likely Science (100)

cran: countcolors

Locates and Counts Pixels Within Color Range(s) in Images
Papers that mentioned: 1

Very Likely Science (75)

cran: COUSCOus

A Residue-Residue Contact Detecting Method
Papers that mentioned: 1

Very Likely Science (75)

cran: blaster

Native R Implementation of an Efficient BLAST-Like Algorithm
Papers that mentioned: 1

Very Likely Science (100)

pypi: phe

Partially Homomorphic Encryption library for Python
Papers that mentioned: 1

Very Likely Science (100)

cran: covBM

Brownian Motion Processes for 'nlme'-Models
Papers that mentioned: 1

Very Likely Science (75)

cran: covid19italy

The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Italy Dataset
Papers that mentioned: 1

Very Likely Science (100)

pypi: backmap

Shows protein backbone structures in compact graphical form using Ramachandran numbers
Papers that mentioned: 1

Very Likely Science (80)

pypi: BatchTINTV3

BatchTINTV3 - GUI created to more efficiently sort Axona/Tint data.
Papers that mentioned: 1

Very Likely Science (85)

pypi: flyr

Flyr is a library for extracting thermal data from FLIR images written fully in Python, without depending on ExifTool.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pmeta

Python for Meta Analysis
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: SimFFPE

NGS Read Simulator for FFPE Tissue
Papers that mentioned: 1

Very Likely Science (90)

cran: CpGFilter

CpG Filtering Method Based on Intra-Class Correlation Coefficients
Papers that mentioned: 1

Very Likely Science (93)

cran: cramer

Multivariate Nonparametric Cramer-Test for the Two-Sample-Problem
Papers that mentioned: 1

Very Likely Science (85)

pypi: flimview

A software framework to handle, visualize and analyze FLIM data
Papers that mentioned: 1

Very Likely Science (100)

cran: MGRASTer

API Client for the MG-RAST Server of the US DOE KBase
Papers that mentioned: 1

Very Likely Science (75)

cran: credsubs

Credible Subsets
Papers that mentioned: 1

Very Likely Science (83)

pypi: fmc

fmc is a simple cli application for one's own convenience.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: SigCheck

Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata
Papers that mentioned: 1

Very Likely Science (90)

pypi: adk

A ADK-dev Kit
Papers that mentioned: 1

Very Likely Science (65)

pypi: baton

Python wrapper for baton.
Papers that mentioned: 1

Very Likely Science (100)

cran: CarletonStats

Functions for Statistics Classes at Carleton College
Papers that mentioned: 1

Very Likely Science (100)

pypi: ADTM

Adaptive Data Tabulation Markup
Papers that mentioned: 1

Very Likely Science (65)

pypi: backbone

Tools for development with Backbone
Papers that mentioned: 1

Very Likely Science (65)

cran: crs

Categorical Regression Splines
Papers that mentioned: 1

Very Likely Science (89)

pypi: battery

Command Line Utilities in Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: aenet

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: SigFuge

SigFuge
Papers that mentioned: 1

Very Likely Science (90)

cran: BivRegBLS

Tolerance Interval and EIV Regression - Method Comparison Studies
Papers that mentioned: 1

Very Likely Science (85)

pypi: bayes

Bayes classification implementation
Papers that mentioned: 1

Very Likely Science (65)

pypi: enki

A Python library to analyze PYBOSSA project's results
Papers that mentioned: 1

Very Likely Science (95)

pypi: aikido

Python library TBA
Papers that mentioned: 1

Very Likely Science (65)

pypi: Aion

Papers that mentioned: 1

Very Likely Science (65)

pypi: AJAS

Lightweight REST Sever framework, based on bottle
Papers that mentioned: 1

Very Likely Science (65)

pypi: alea

Papers that mentioned: 1

Very Likely Science (65)

cran: cubature

Adaptive Multivariate Integration over Hypercubes
Papers that mentioned: 1

Very Likely Science (100)

pypi: BayesASE

Bayesian analysis of allele specific expression
Papers that mentioned: 1

Very Likely Science (100)

pypi: aladin

Analysis of large-dimensional data in neuroscience
Papers that mentioned: 1

Very Likely Science (75)

cran: trustOptim

Trust Region Optimization for Nonlinear Functions with Sparse Hessians
Papers that mentioned: 1

Very Likely Science (100)

cran: DACF

Data Analysis with Ceiling and/or Floor Data
Papers that mentioned: 1

Very Likely Science (93)

cran: dataverse

Client for Dataverse 4+ Repositories
Papers that mentioned: 1

Very Likely Science (100)

pypi: Amara

Library for XML processing in Python
Papers that mentioned: 1

Very Likely Science (65)

cran: mlr3proba

Probabilistic Supervised Learning for 'mlr3'
Papers that mentioned: 1

Very Likely Science (75)

cran: MixTwice

Large-Scale Hypothesis Testing by Variance Mixing
Papers that mentioned: 1

Very Likely Science (93)

cran: mkde

2D and 3D Movement-Based Kernel Density Estimates (MKDEs)
Papers that mentioned: 1

Very Likely Science (83)

cran: DiffXTables

Pattern Analysis Across Contingency Tables
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: seqCNA

Copy number analysis of high-throughput sequencing cancer data
Papers that mentioned: 1

Very Likely Science (75)

cran: DLMtool

Data-Limited Methods Toolkit
Papers that mentioned: 1

Very Likely Science (75)

An extensive library for processing FoLiA documents. FoLiA stands for Format for Linguistic Annotation and is a very rich XML-based format used by various Natural Language Processing tools.
Papers that mentioned: 1

Very Likely Science (100)