Packages with Software Mentions in Scientific Papers

Simple Scrum System is a basic Django-based Scrum-like project manager. It takes advantage of the automagic admin contrib site.
Papers that mentioned: 1

Very Likely Science (65)

cran: sumFREGAT

Fast Region-Based Association Tests on Summary Statistics
Papers that mentioned: 1

Very Likely Science (85)

cran: netgsa

Network-Based Gene Set Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: TrackingNet

TrackingNet SDK
Papers that mentioned: 1

Likely Science (40)

pypi: floor

a python module to floor strings or variables
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: oneSENSE

One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)
Papers that mentioned: 1

Very Likely Science (85)

cran: subscore

Computing Subscores in Classical Test Theory and Item Response Theory
Papers that mentioned: 1

Very Likely Science (83)

cran: SubVis

Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices
Papers that mentioned: 1

Very Likely Science (83)

cran: supcluster

Supervised Cluster Analysis
Papers that mentioned: 1

Very Likely Science (93)

pypi: lulz

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

cran: alphabetr

Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells
Papers that mentioned: 1

Very Likely Science (88)

pypi: folder

Papers that mentioned: 1

Very Likely Science (65)

pypi: lre

Papers that mentioned: 1

Unlikely Science (0)

pypi: luigi

Workflow mgmgt + task scheduling + dependency resolution.
Papers that mentioned: 1

Very Likely Science (100)

pypi: food

yum
Papers that mentioned: 1

Very Likely Science (65)

pypi: MicroCast

MicroCast
Papers that mentioned: 1

Very Likely Science (65)

pypi: lvs

Stream video from camera or video file to devices on your local network
Papers that mentioned: 1

Very Likely Science (75)

pypi: machine

A sample Python project
Papers that mentioned: 1

Very Likely Science (65)

pypi: presence

Presence
Papers that mentioned: 1

Very Likely Science (65)

pypi: Madlib

Papers that mentioned: 1

Very Likely Science (65)

pypi: madeira

Common AWS operation wrappers
Papers that mentioned: 1

Very Likely Science (65)

pypi: M2Crypto

M2Crypto: A Python crypto and SSL toolkit
Papers that mentioned: 1

Very Likely Science (65)

pypi: packager

C/C++ package manager built on the top of gyp
Papers that mentioned: 1

Very Likely Science (65)

cran: RSCAT

Shadow-Test Approach to Computerized Adaptive Testing
Papers that mentioned: 1

Very Likely Science (95)

pypi: mgl

Papers that mentioned: 1

Very Likely Science (65)

pypi: lists

some functions for list
Papers that mentioned: 1

Very Likely Science (65)

pypi: threads

UNKNOWN
Papers that mentioned: 1

Likely Science (40)

cran: RFOC

Graphics for Spherical Distributions and Earthquake Focal Mechanisms
Papers that mentioned: 1

Very Likely Science (93)

pypi: jex

JSON/YAML interactive explorer - no JQ
Papers that mentioned: 1

Very Likely Science (65)

pypi: microrheology

A collection of methods to analyse particle trajectories
Papers that mentioned: 1

Very Likely Science (65)

pypi: tunel

commander and viewer to tunnel commands for HPC
Papers that mentioned: 1

Very Likely Science (80)

pypi: miepython

Mie scattering of a plane wave by a sphere
Papers that mentioned: 1

Very Likely Science (100)

pypi: torchtext

Text utilities, models, transforms, and datasets for PyTorch.
Papers that mentioned: 1

Very Likely Science (100)

pypi: touchstone

IoC framework driven by annotations and type hints
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: OMICsPCA

An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples
Papers that mentioned: 1

Very Likely Science (100)

cran: ri

R package for performing randomization-based inference for experiments
Papers that mentioned: 1

Very Likely Science (85)

pypi: VirKraken

An extension to Kraken2
Papers that mentioned: 1

Very Likely Science (100)

pypi: VirtualHost

Apache(linux) virtual host creator
Papers that mentioned: 1

Very Likely Science (65)

pypi: ly

This is just a test module
Papers that mentioned: 1

Very Likely Science (65)

pypi: pareto

Nondominated sorting for multi-objective problems
Papers that mentioned: 1

Very Likely Science (100)

pypi: aleph

ALEPH is a bioinformatics tool for structure interpretation and generation of fragment-based library for Molecular Replacement.
Papers that mentioned: 1

Very Likely Science (65)

pypi: parmap

map and starmap implementations passing additional arguments and parallelizing if possible
Papers that mentioned: 1

Very Likely Science (100)

pypi: DStream

An experimental Java-8-stream-like lib.
Papers that mentioned: 1

Very Likely Science (75)

pypi: DFW

Papers that mentioned: 1

Very Likely Science (65)

pypi: pax

The Pythonic API for XML
Papers that mentioned: 1

Very Likely Science (65)

pypi: pbc

TODO
Papers that mentioned: 1

Likely Science (40)

pypi: PBC4cip

PBC4cip classifier for class imbalance problems
Papers that mentioned: 1

Very Likely Science (75)

pypi: pbcommand

Library and Tools for interfacing to PacBio pbsmrtpipe workflow engine.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pdftex

pdftex backend for matplotlib
Papers that mentioned: 1

Very Likely Science (80)

pypi: ugali

Ultra-faint galaxy likelihood toolkit.
Papers that mentioned: 1

Very Likely Science (100)

pypi: ugd

Drawing graphs uniformly at random subject to partition constraints (Partition Adjacency Matrix). Used for network testing.
Papers that mentioned: 1

Very Likely Science (75)

pypi: ttpy

TTPY: Python implementation of the Tensor Train (TT) - Toolbox.
Papers that mentioned: 1

Very Likely Science (100)

pypi: skflow

Simplified Interface for TensorFlow for Deep Learning
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: mAPKL

A Hybrid Feature Selection method for gene expression data
Papers that mentioned: 1

Very Likely Science (100)

pypi: dart

Turn URL variables into models.
Papers that mentioned: 1

Very Likely Science (65)

pypi: darkweb

Python HTTP for Humans.
Papers that mentioned: 1

Very Likely Science (65)

pypi: permutation

Permutations of finitely many positive integers
Papers that mentioned: 1

Very Likely Science (80)

cran: MetaboQC

Normalize Metabolomic Data using QC Signal
Papers that mentioned: 1

Very Likely Science (75)

pypi: lightsheet

Papers that mentioned: 1

Unlikely Science (0)

pypi: sklearning

metrics module
Papers that mentioned: 1

Very Likely Science (65)

pypi: ttr

Turbo test runner
Papers that mentioned: 1

Very Likely Science (65)

pypi: Lina

Text template library
Papers that mentioned: 1

Very Likely Science (65)

pypi: pgplot

Graphing functionality, integrated with pygame!
Papers that mentioned: 1

Very Likely Science (75)

pypi: tuber

Finds project/repository root
Papers that mentioned: 1

Very Likely Science (65)

pypi: verif

A verification program for meteorological forecasts and observations
Papers that mentioned: 1

Very Likely Science (100)

pypi: agile

A meta-package containing a full toolset for agile development with TDD
Papers that mentioned: 1

Very Likely Science (85)

pypi: vhost

Tool for help creating virtual hosts
Papers that mentioned: 1

Very Likely Science (65)

pypi: phg

Password hasher and generator
Papers that mentioned: 1

Likely Science (40)

pypi: drop

Uploads data to a remote www directory via scp and returns a public url.
Papers that mentioned: 1

Very Likely Science (80)

pypi: phylofisher

PhyloFisher is a software package for the creation, analysis, and visualization of phylogenomic datasets that consist of protein sequences from eukaryotic organisms.
Papers that mentioned: 1

Very Likely Science (100)

pypi: hermes

Hermes is an extensible XMPP-based chatroom server written in Python.
Papers that mentioned: 1

Likely Science (40)

pypi: droid

Droid is a remote communication application created to communicate with Android devices on the local network over the Android debug bridge (adb). Available as a CLI or GUI.
Papers that mentioned: 1

Likely Science (50)