Packages with Software Mentions in Scientific Papers

pypette (to be read as pipette) is a module which makes building pipelines ridiculously simple, allowing users to control the flow with minimal instructions.
Papers that mentioned: 1

Likely Science (40)

pypi: pyphe

Python toolbox for phenotype analysis of arrayed microbial colonies
Papers that mentioned: 1

Very Likely Science (95)

pypi: spec2nii

Multi-format in vivo MR spectroscopy conversion to NIFTI
Papers that mentioned: 1

Very Likely Science (100)

pypi: pyMosaic

MOlecular SimulAtion Interchange Conventions
Papers that mentioned: 1

Very Likely Science (100)

pypi: spec2vec

Word2Vec based similarity measure of mass spectrometry data.
Papers that mentioned: 1

Very Likely Science (100)

pypi: Pymote

A high-level Python library for simulation of distributed algorithms.
Papers that mentioned: 1

Very Likely Science (90)

pypi: pymp

A small package of medical physics toys
Papers that mentioned: 1

Very Likely Science (75)

pypi: pyMPI

MPI bindings for Python! Brings distributed parallel programming to Python from small SMP to huge clusters.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pymummer

Wrapper for MUMmer
Papers that mentioned: 1

Very Likely Science (100)

pypi: pymuvr

Multi-unit Van Rossum spike train metric
Papers that mentioned: 1

Very Likely Science (100)

pypi: Pynac

A Python wrapper around the Dynac charged particle simulator
Papers that mentioned: 1

Likely Science (55)

pypi: pypdb

A Python wrapper for the RCSB Protein Data Bank (PDB) API
Papers that mentioned: 1

Very Likely Science (100)

pypi: specification

Python implementaion of the `Specification` pattern
Papers that mentioned: 1

Very Likely Science (65)

pypi: pynrrd

Pure python module for reading and writing NRRD files.
Papers that mentioned: 1

Very Likely Science (100)

pypi: pyparallel

Python Parallel Port Extension
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyows

OWS utilities
Papers that mentioned: 1

Very Likely Science (80)

pypi: pypez

simple pipelines in python
Papers that mentioned: 1

Very Likely Science (65)

pypi: spectroscopy

Spectroscopy of systems with explicit vibrational degrees of Freedom
Papers that mentioned: 1

Very Likely Science (85)

pypi: SpectroscPy

SpectroscPy: Python tools for spectroscopy.
Papers that mentioned: 1

Very Likely Science (65)

pypi: PyProcessMacro

A Python library for moderation, mediation and conditional process analysis. Based on Andrew F. Hayes Process Macro.
Papers that mentioned: 1

Very Likely Science (100)

pypi: spgl1

SPGL1: A solver for large-scale sparse reconstruction.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pyramid-arima

Python's forecast::auto.arima equivalent
Papers that mentioned: 1

Very Likely Science (95)

pypi: spicy

Because spellchecker. SciPy at your fingertips
Papers that mentioned: 1

Very Likely Science (65)

pyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of structures. It is specially tuned to do fast collective RMSD calculations, as pairwise RMSD matrices.
Papers that mentioned: 1

Very Likely Science (85)

pypi: PyRNA

View RNA secondary structure and BLAST search it for identification
Papers that mentioned: 1

Very Likely Science (80)

pypi: spikeextractors

Python module for extracting recorded and spike sorted extracellular data from different file types and formats
Papers that mentioned: 1

Very Likely Science (100)

pypi: pysat

'Supports science analysis across disparate data platforms'
Papers that mentioned: 1

Very Likely Science (100)

pypi: pyscf

PySCF: Python-based Simulations of Chemistry Framework
Papers that mentioned: 1

Very Likely Science (90)

pypi: pysha3

SHA-3 (Keccak) for Python 2.7 - 3.5
Papers that mentioned: 1

Very Likely Science (65)

pypi: spikely

Spike sorting made simple
Papers that mentioned: 1

Very Likely Science (100)

pypi: Pytheas

Framework for a fetch-and-send daemon.
Papers that mentioned: 1

Very Likely Science (65)

pypi: python-barcode

Create standard barcodes with Python. No external modules needed. (optional Pillow support included).
Papers that mentioned: 1

Very Likely Science (100)

pypi: python_speech_features

Python Speech Feature extraction
Papers that mentioned: 1

Very Likely Science (95)

pypi: spinach

Modern Redis task queue for Python 3
Papers that mentioned: 1

Very Likely Science (65)

pypi: pytplot

A python version of IDL tplot libraries
Papers that mentioned: 1

Very Likely Science (100)

pypi: Pytrack

face tracking software for use with the raspberry pi.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pytri

Pytri, redux
Papers that mentioned: 1

Very Likely Science (85)

pypi: pyts

A python package for time series classification
Papers that mentioned: 1

Very Likely Science (100)

pypi: pyvjoy

Python bindings for vJoy
Papers that mentioned: 1

Very Likely Science (65)

pypi: spitz

The reference python implementation of the SPITS programming model
Papers that mentioned: 1

Very Likely Science (100)

pypi: PyxMPI

Pyrex wrapper for MPI (Message Passing Interface) 1.1
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyzotero

Python wrapper for the Zotero API
Papers that mentioned: 1

Very Likely Science (100)

pypi: srd

Modele de simulation du revenu disponible Quebec
Papers that mentioned: 1

Very Likely Science (75)

pypi: SplitStrains

SplitStrains detects and separates mixed strains of Mycobacterium tuberculosis.
Papers that mentioned: 1

Very Likely Science (65)

pypi: QCluster

An SDK to enable quick clustering of microservices.
Papers that mentioned: 1

Very Likely Science (100)

pypi: qd

QD-Engineering Python Library for CAE
Papers that mentioned: 1

Very Likely Science (80)

pypi: qdiv

Microbial diversity calculations
Papers that mentioned: 1

Likely Science (55)

pypi: qic

data(JSON/XML/YAML) command line query tools with interactive mode.
Papers that mentioned: 1

Very Likely Science (65)

pypi: qp

A web-application framework.
Papers that mentioned: 1

Very Likely Science (65)

pypi: sushi

Create package template for everything
Papers that mentioned: 1

Very Likely Science (65)

pypi: qreg

A quantile regression library to fit an arbitrary function
Papers that mentioned: 1

Very Likely Science (90)

pypi: qs

CLI program to quickly share directories using a http server
Papers that mentioned: 1

Very Likely Science (65)

pypi: qsim

A simple package for simulating quantum circuits.
Papers that mentioned: 1

Very Likely Science (80)

pypi: spopt

Spatial Optimization in PySAL
Papers that mentioned: 1

Very Likely Science (100)

pypi: qstats

SGE qstat info
Papers that mentioned: 1

Very Likely Science (85)

pypi: quantile

Python Implementation of Graham Cormode and S. Muthukrishnan's Effective Computation of Biased Quantiles over Data Streams in ICDE'05
Papers that mentioned: 1

Very Likely Science (80)

pypi: quartz

Track events in other applications
Papers that mentioned: 1

Very Likely Science (65)

pypi: questioner

A lightweight Python interface for annotating things.
Papers that mentioned: 1

Very Likely Science (85)

pypi: questions

Questions is a form library that uses the power of SurveyJS for the UI.
Papers that mentioned: 1

Very Likely Science (65)

pypi: spread

CSV Spreadsheet library
Papers that mentioned: 1

Very Likely Science (65)

pypi: zeta

SCM and Project Collaboration Suite
Papers that mentioned: 1

Very Likely Science (65)

pypi: quicklime

Visualization tool for Concrete, a data serialization format for NLP
Papers that mentioned: 1

Very Likely Science (100)

pypi: quickshear

Quickshear Defacing for Neuroimages
Papers that mentioned: 1

Very Likely Science (100)

pypi: spreg

PySAL Spatial Econometric Regression in Python
Papers that mentioned: 1

Very Likely Science (100)

pypi: spseg

A segmentation and postagging tool package
Papers that mentioned: 1

Very Likely Science (65)

pypi: r2d2

some handy functions
Papers that mentioned: 1

Very Likely Science (65)

pypi: SPTE

Simple Python Template Engine
Papers that mentioned: 1

Very Likely Science (65)

pypi: spykeviewer

A multi-platform GUI application for navigating, analyzing and visualizing electrophysiological datasets
Papers that mentioned: 1

Very Likely Science (80)

pypi: spynner

Programmatic web browsing module with AJAX support for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: spyrmsd

Python RMSD tool with symmetry correction.
Papers that mentioned: 1

Very Likely Science (65)

pypi: statspackage

To find Mean,Median,Mode of the given numbers
Papers that mentioned: 1

Very Likely Science (65)

pypi: stt

A library for doing speech recognition using a Coqui STT model
Papers that mentioned: 1

Very Likely Science (100)

pypi: zxcvbn

Python implementation of Dropbox's realistic password strength estimator
Papers that mentioned: 1

Very Likely Science (65)

pypi: sumo

Heavy weight plotting tools for ab initio solid-state calculations
Papers that mentioned: 1

Very Likely Science (100)

pypi: swan

Easy continuous wavelet analysis
Papers that mentioned: 1

Very Likely Science (90)

pypi: SwarmPackagePy

Library of swarm optimization algorithms.
Papers that mentioned: 1

Very Likely Science (90)

pypi: symfit

Symbolic Fitting; fitting as it should be.
Papers that mentioned: 1

Very Likely Science (100)

pypi: symlink

symlinks management
Papers that mentioned: 1

Very Likely Science (65)

pypi: symmetrize

Symmetrization and centering of 2D pattern using nonrigid point set registration
Papers that mentioned: 1

Very Likely Science (65)

pypi: symspellpy

Python SymSpell
Papers that mentioned: 1

Likely Science (40)

pypi: TADLib

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
Papers that mentioned: 1

Very Likely Science (95)

pypi: tangerine

API for the Tangerine Bank
Papers that mentioned: 1

Very Likely Science (65)

pypi: tangle

Python framework with DI, AOP support
Papers that mentioned: 1

Very Likely Science (65)

pypi: task

Task cli tool
Papers that mentioned: 1

Very Likely Science (65)

pypi: Taskboard

Tasks, boards, notes & code snippets for the command-line environment
Papers that mentioned: 1

Very Likely Science (65)