Packages with Software Mentions in Scientific Papers

pypi: metasearch

Pre built metasearch repository for easy uses.
Papers that mentioned: 1

Very Likely Science (65)

cran: plinkQC

Genotype Quality Control with 'PLINK'
Papers that mentioned: 1

Very Likely Science (100)

pypi: memcache

Memcached client for Python
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: fastLiquidAssociation

functions for genome-wide application of Liquid Association
Papers that mentioned: 1

Very Likely Science (90)

cran: potential

Implementation of the Potential Model
Papers that mentioned: 1

Very Likely Science (100)

pypi: tal

Build Tool
Papers that mentioned: 1

Very Likely Science (65)

pypi: met

Multinomial Exact Tests
Papers that mentioned: 1

Very Likely Science (80)

pypi: heuristic

Optimization package with wide flexibility for logical understanding
Papers that mentioned: 1

Very Likely Science (90)

pypi: opentree

Library for interacting with Open Tree of Life resources
Papers that mentioned: 1

Very Likely Science (100)

pypi: gntools

GEONIS toolset for the Geocom Python Framework (Esri ArcGIS).
Papers that mentioned: 1

Very Likely Science (80)

pypi: jh

Papers that mentioned: 1

Very Likely Science (65)

pypi: JaqalPaq-extras

Python tools for Jaqal (extras)
Papers that mentioned: 1

Very Likely Science (80)

bioconductor: bioassayR

Cross-target analysis of small molecule bioactivity
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: rols

An R interface to the Ontology Lookup Service
Papers that mentioned: 1

Very Likely Science (100)

pypi: moneta

Emulator for different kinds (Debian/Yum/Pypi/Maven/…) of package repositories on the same server.
Papers that mentioned: 1

Very Likely Science (65)

cran: EFAtools

Fast and Flexible Implementations of Exploratory Factor Analysis Tools
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: rpx

R Interface to the ProteomeXchange Repository
Papers that mentioned: 1

Very Likely Science (100)

pypi: comparator

Utility for comparing results between data sources
Papers that mentioned: 1

Likely Science (40)

pypi: momepy

Urban Morphology Measuring Toolkit
Papers that mentioned: 1

Very Likely Science (100)

cran: biocompute

Create and Manipulate BioCompute Objects
Papers that mentioned: 1

Very Likely Science (81)

pypi: helios

Python library to work with complex networks
Papers that mentioned: 1

Likely Science (50)

cran: eGST

Leveraging eQTLs to Identify Individual-Level Tissue of Interest for a Complex Trait
Papers that mentioned: 1

Very Likely Science (81)

bioconductor: BiocStyle

Standard styles for vignettes and other Bioconductor documents
Papers that mentioned: 1

Very Likely Science (100)

cran: eesim

Simulate and Evaluate Time Series for Environmental Epidemiology
Papers that mentioned: 1

Very Likely Science (100)

pypi: glmtools

GLMtools
Papers that mentioned: 1

Very Likely Science (80)

cran: EdSurvey

Analysis of NCES Education Survey and Assessment Data
Papers that mentioned: 1

Very Likely Science (85)

pypi: scd

Something Completely different
Papers that mentioned: 1

Very Likely Science (65)

cran: EHRtemporalVariability

Delineating Temporal Dataset Shifts in Electronic Health Records
Papers that mentioned: 1

Very Likely Science (95)

cran: eigenmodel

Semiparametric Factor and Regression Models for Symmetric Relational Data
Papers that mentioned: 1

Very Likely Science (93)

cran: POUMM

The Phylogenetic Ornstein-Uhlenbeck Mixed Model
Papers that mentioned: 1

Very Likely Science (85)

cran: EDOIF

Empirical Distribution Ordering Inference Framework (EDOIF)
Papers that mentioned: 1

Very Likely Science (100)

cran: eirm

Explanatory Item Response Modeling for Dichotomous and Polytomous Items
Papers that mentioned: 1

Very Likely Science (100)

cran: edmdata

Data Sets for Psychometric Modeling
Papers that mentioned: 1

Very Likely Science (100)

cran: elec

Collection of Functions for Statistical Election Audits
Papers that mentioned: 1

Very Likely Science (93)

cran: SSRA

Sakai Sequential Relation Analysis
Papers that mentioned: 1

Very Likely Science (93)

cran: EmpiricalCalibration

Routines for Performing Empirical Calibration of Observational Study Estimates
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: rqt

rqt: utilities for gene-level meta-analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: isi

sample test
Papers that mentioned: 1

Very Likely Science (65)

cran: EloOptimized

Optimized Elo Rating Method for Obtaining Dominance Ranks
Papers that mentioned: 1

Very Likely Science (83)

pypi: moment

Dealing with dates and times should be easy
Papers that mentioned: 1

Very Likely Science (65)

pypi: monica

monica is a command line chef that brings you tasty food
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: BBCAnalyzer

BBCAnalyzer: an R/Bioconductor package for visualizing base counts
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: Cepo

Cepo for the identification of differentially stable genes
Papers that mentioned: 1

Very Likely Science (100)

pypi: scenario

SCENe interfAces for Robot Input/Output.
Papers that mentioned: 1

Very Likely Science (80)

pypi: kachery

Please use kachery-cloud instead
Papers that mentioned: 1

Very Likely Science (65)

cran: EFA.MRFA

Dimensionality Assessment Using Minimum Rank Factor Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: EcoNetGen

Simulate and Sample from Ecological Interaction Networks
Papers that mentioned: 1

Very Likely Science (100)

cran: ssfa

Spatial Stochastic Frontier Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: companion

Companion robot
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: BANDITS

BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Papers that mentioned: 1

Very Likely Science (100)

pypi: Scavager

Proteomics post-search algorithm
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: BaalChIP

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: attract

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
Papers that mentioned: 1

Very Likely Science (100)

pypi: scattertext

An NLP package to visualize interesting terms in text.
Papers that mentioned: 1

Very Likely Science (81)

bioconductor: biovizBase

Basic graphic utilities for visualization of genomic data.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: biscuiteer

Convenience Functions for Biscuit
Papers that mentioned: 1

Very Likely Science (100)

cran: ecolottery

Coalescent-Based Simulation of Ecological Communities
Papers that mentioned: 1

Very Likely Science (85)

pypi: moveit

ns_server master events analyzer
Papers that mentioned: 1

Very Likely Science (65)

pypi: monitors

monitor tools
Papers that mentioned: 1

Very Likely Science (80)

cran: EBEN

Empirical Bayesian Elastic Net
Papers that mentioned: 1

Very Likely Science (85)

cran: embed

Extra Recipes for Encoding Predictors
Papers that mentioned: 1

Very Likely Science (100)

pypi: molyso

MOther machine anaLYsis SOftware
Papers that mentioned: 1

Very Likely Science (100)

cran: echarts4r

Create Interactive Graphs with 'Echarts JavaScript' Version 5
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: BufferedMatrix

A matrix data storage object held in temporary files
Papers that mentioned: 1

Very Likely Science (100)

cran: EBglmnet

Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
Papers that mentioned: 1

Very Likely Science (85)

cran: easyalluvial

Generate Alluvial Plots with a Single Line of Code
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: BUSpaRse

kallisto | bustools R utilities
Papers that mentioned: 1

Very Likely Science (100)

cran: spTimer

Spatio-Temporal Bayesian Modelling
Papers that mentioned: 1

Very Likely Science (85)

pypi: iron

iron: the powerful but simple build tool using flows.
Papers that mentioned: 1

Very Likely Science (65)

pypi: ESRNN

Pytorch implementation of the ESRNN
Papers that mentioned: 1

Very Likely Science (83)

cran: DysPIAData

Background and Pathway Data Used in 'DysPIA'
Papers that mentioned: 1

Very Likely Science (85)

cran: bayescount

Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC
Papers that mentioned: 1

Very Likely Science (85)

pypi: scatterbrain

Papers that mentioned: 1

Very Likely Science (65)

cran: SPSL

Site Percolation on Square Lattices (SPSL)
Papers that mentioned: 1

Very Likely Science (75)

cran: BRDT

Binomial Reliability Demonstration Tests
Papers that mentioned: 1

Very Likely Science (100)

pypi: ippai

Image Processing for Photoacoustic Imaging
Papers that mentioned: 1

Very Likely Science (65)

pypi: moltemplate

A general cross-platform text-based molecule builder for LAMMPS
Papers that mentioned: 1

Very Likely Science (100)

pypi: precise

The home of Schur Hierarchical Portfolios: an aesthetically pleasing version of Hierarchical Risk Parity
Papers that mentioned: 1

Likely Science (40)

pypi: MLibrary

Machine Learning Algorithms Library with Numpy & pure python
Papers that mentioned: 1

Very Likely Science (75)

pypi: iostream

iostream for Python
Papers that mentioned: 1

Likely Science (40)

pypi: complexity

A refreshingly simple static site generator, for those who like to work in HTML.
Papers that mentioned: 1

Very Likely Science (65)

pypi: scGeneFit

Genetic marker selection with linear programming
Papers that mentioned: 1

Very Likely Science (91)

cran: bnspatial

Spatial Implementation of Bayesian Networks and Mapping
Papers that mentioned: 1

Very Likely Science (89)

cran: dvir

Disaster Victim Identification
Papers that mentioned: 1

Very Likely Science (81)

cran: dupiR

Bayesian inference from count data using discrete uniform priors
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: RefPlus

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.
Papers that mentioned: 1

Very Likely Science (90)

pypi: compneuro

Python Module for Book 4020
Papers that mentioned: 1

Very Likely Science (65)

cran: EbayesThresh

Empirical Bayes Thresholding and Related Methods
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: celda

CEllular Latent Dirichlet Allocation
Papers that mentioned: 1

Very Likely Science (100)

cran: DSWE

Data Science for Wind Energy
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: SAIGEgds

Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association Studies
Papers that mentioned: 1

Very Likely Science (100)

pypi: schedular

Schedular is here to schedule jobs by cut off time or jobs that require start+end+interval.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: CellMixS

Evaluate Cellspecific Mixing
Papers that mentioned: 1

Very Likely Science (94)

bioconductor: recoup

An R package for the creation of complex genomic profile plots
Papers that mentioned: 1

Very Likely Science (100)

cran: dssd

Distance Sampling Survey Design
Papers that mentioned: 1

Very Likely Science (100)

cran: latte

Interface to 'LattE' and '4ti2'
Papers that mentioned: 1

Very Likely Science (81)

pypi: kkcalc

A calculator for the Kramers Kronig transform of X-ray spectra
Papers that mentioned: 1

Very Likely Science (80)

pypi: morse

Convert strings to morse code.
Papers that mentioned: 1

Very Likely Science (65)

cran: ensembleTax

Ensemble Taxonomic Assignments of Amplicon Sequencing Data
Papers that mentioned: 1

Very Likely Science (85)

cran: enRich

Analysis of Multiple ChIP-Seq Data
Papers that mentioned: 1

Very Likely Science (85)