Packages with Software Mentions in Scientific Papers

pypi: jimmy

Update jenkins configuration using YAML
Papers that mentioned: 1

Very Likely Science (65)

pypi: jpar

This tool helps to show the json data collected from different sources in a single format.
Papers that mentioned: 1

Very Likely Science (65)

pypi: SFrame

SFrame is an scalable, out-of-core dataframe, which allows you to work with datasets that are larger than the amount of RAM on your system.
Papers that mentioned: 1

Very Likely Science (80)

pypi: jicbioimage.transform

Python package wrapping commonly used image transformations.
Papers that mentioned: 1

Very Likely Science (100)

pypi: jicbioimage.segment

Python package designed to make it easy to segment bio images.
Papers that mentioned: 1

Very Likely Science (100)

pypi: tardigrade

A thing
Papers that mentioned: 1

Very Likely Science (65)

pypi: pymba

Pymba is a Python wrapper for Allied Vision's Vimba C API.
Papers that mentioned: 1

Very Likely Science (80)

pypi: PyMaxflow

A mincut/maxflow package for Python
Papers that mentioned: 1

Very Likely Science (80)

pypi: LinearAlgebra

Tools for working with matrices and vectors.
Papers that mentioned: 1

Very Likely Science (80)

pypi: Longbow

Biomolecular simulation remote job submission tool.
Papers that mentioned: 1

Very Likely Science (65)

pypi: EvoMSA

Sentiment Analysis System based on B4MSA and EvoDAG
Papers that mentioned: 1

Very Likely Science (90)

pypi: jetpack

A package templating system.
Papers that mentioned: 1

Very Likely Science (65)

pypi: synthia

Multidimensional synthetic data generation in Python
Papers that mentioned: 1

Very Likely Science (90)

pypi: snpcaller

Read bam file and find the snp positions
Papers that mentioned: 1

Very Likely Science (65)

pypi: icl

Interval Container Library
Papers that mentioned: 1

Very Likely Science (65)

pypi: kml2geojson

A Python library to covert KML files to GeoJSON files
Papers that mentioned: 1

Very Likely Science (65)

pypi: Linq

Language Integrated Query for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: SexMachine

Get the gender from first name.
Papers that mentioned: 1

Very Likely Science (65)

pypi: jenks

a jenkins command-line tool
Papers that mentioned: 1

Very Likely Science (65)

pypi: LiPD

LiPD utilities to process, convert, and analyze data.
Papers that mentioned: 1

Very Likely Science (100)

pypi: liputils

A small Python package to manipulate complex lipids.
Papers that mentioned: 1

Very Likely Science (91)

pypi: shellfish

shellfish ~ shell & file-system utils
Papers that mentioned: 1

Very Likely Science (65)

pypi: listcompare

This module provides support to compare two lists that have same or different types of data in it.
Papers that mentioned: 1

Very Likely Science (85)

pypi: PyModel

Model-based testing in Python
Papers that mentioned: 1

Likely Science (50)

pypi: NiMARE

NiMARE: Neuroimaging Meta-Analysis Research Environment
Papers that mentioned: 1

Very Likely Science (100)

cran: tidySEM

Tidy Structural Equation Modeling
Papers that mentioned: 1

Very Likely Science (100)

cran: tidystats

Save Output of Statistical Tests
Papers that mentioned: 1

Very Likely Science (85)

Jenga is an open source experimentation library that allows data science practititioners and researchers to study the effect of common data corruptions (e.g., missing values, broken character encodings) on the prediction quality of their ML models.
Papers that mentioned: 1

Very Likely Science (100)

pypi: narrative

A small Python package for splitting text into dialogue and narrative.
Papers that mentioned: 1

Very Likely Science (80)

cran: vows

Voxelwise Semiparametrics
Papers that mentioned: 1

Very Likely Science (75)

pypi: livescript

Call LiveScript from Python
Papers that mentioned: 1

Very Likely Science (100)

pypi: taxis

Sequence classification interface library
Papers that mentioned: 1

Very Likely Science (65)

pypi: llc

Prettier LowLevelCallables
Papers that mentioned: 1

Very Likely Science (100)

pypi: pe

Library for Parsing Expression Grammars (PEG)
Papers that mentioned: 1

Very Likely Science (75)

pypi: pymummer

Wrapper for MUMmer
Papers that mentioned: 1

Very Likely Science (100)

pypi: malign

Library for multiple asymmetric alignments on different alphabets
Papers that mentioned: 1

Very Likely Science (85)

pypi: pymuvr

Multi-unit Van Rossum spike train metric
Papers that mentioned: 1

Very Likely Science (100)

cran: statgenGWAS

Genome Wide Association Studies
Papers that mentioned: 1

Very Likely Science (100)

pypi: nmrquant

Quantify metabolites from 1D Proton NMR experiments
Papers that mentioned: 1

Very Likely Science (75)

cran: stationaRy

Detailed Meteorological Data from Stations All Over the World
Papers that mentioned: 1

Very Likely Science (75)

pypi: seven

Python 2.5 compatibility wrapper for Python 2.7 code.
Papers that mentioned: 1

Very Likely Science (65)

pypi: upload.py

An mutiple upload service library
Papers that mentioned: 1

Very Likely Science (65)

cran: statip

Statistical Functions for Probability Distributions and Regression
Papers that mentioned: 1

Very Likely Science (85)

pypi: iterativeWGCNA

Iterative application of WGCNA
Papers that mentioned: 1

Very Likely Science (100)

pypi: Pynac

A Python wrapper around the Dynac charged particle simulator
Papers that mentioned: 1

Likely Science (55)

pypi: pypdb

A Python wrapper for the RCSB Protein Data Bank (PDB) API
Papers that mentioned: 1

Very Likely Science (100)

cran: VLTimeCausality

Variable-Lag Time Series Causality Inference Framework
Papers that mentioned: 1

Very Likely Science (97)

cran: stemmatology

Stemmatological Analysis of Textual Traditions
Papers that mentioned: 1

Very Likely Science (100)

pypi: Turbulence

Code for Turbulence Analyze
Papers that mentioned: 1

Very Likely Science (65)

cran: STEPCAM

ABC-SMC Inference of STEPCAM
Papers that mentioned: 1

Very Likely Science (100)

cran: stampr

Spatial Temporal Analysis of Moving Polygons
Papers that mentioned: 1

Very Likely Science (100)

pypi: synthetica

A client for synthetica
Papers that mentioned: 1

Very Likely Science (65)

pypi: man

Project manager for pypi libraries
Papers that mentioned: 1

Very Likely Science (65)

cran: steps

Spatially- and Temporally-Explicit Population Simulator
Papers that mentioned: 1

Very Likely Science (83)

pypi: specification

Python implementaion of the `Specification` pattern
Papers that mentioned: 1

Very Likely Science (65)

cran: stevedore

Docker Client
Papers that mentioned: 1

Very Likely Science (75)

pypi: NoAho

Fast, non-overlapping simultaneous multiple keyword search
Papers that mentioned: 1

Very Likely Science (65)

pypi: shmlast

An improved implementation of Conditional Reciprocal Best Hits with LAST and Python.
Papers that mentioned: 1

Very Likely Science (85)

pypi: nocloud

Tools for creating a NoCloud image.
Papers that mentioned: 1

Very Likely Science (65)

pypi: lmdb

Universal Python binding for the LMDB 'Lightning' Database
Papers that mentioned: 1

Very Likely Science (65)

cran: stability

Stability Analysis of Genotype by Environment Interaction (GEI)
Papers that mentioned: 1

Very Likely Science (91)

pypi: URF

Unsupervised Random Forest (Random Forest Clustering)
Papers that mentioned: 1

Very Likely Science (80)

pypi: iva

Iterative Virus Assembler
Papers that mentioned: 1

Very Likely Science (100)

pypi: itunes

iTunes.app (macOS)
Papers that mentioned: 1

Likely Science (40)

cran: strand

A Framework for Investment Strategy Simulation
Papers that mentioned: 1

Very Likely Science (85)

cran: sss

Import Files in the Triple-s (Standard Survey Structure) Format
Papers that mentioned: 1

Very Likely Science (75)

pypi: NeXpy

A Python GUI to analyze NeXus data
Papers that mentioned: 1

Very Likely Science (90)

cran: STraTUS

Enumeration and Uniform Sampling of Transmission Trees for a Known Phylogeny
Papers that mentioned: 1

Very Likely Science (100)

pypi: sets

Read datasets in a standard way.
Papers that mentioned: 1

Very Likely Science (65)

pypi: lapsolver

Fast linear assignment problem solvers
Papers that mentioned: 1

Very Likely Science (85)

pypi: snet

3D Scattering transform using periodic wavelet.
Papers that mentioned: 1

Very Likely Science (80)

pypi: irt

Item Response Theory in Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: pynrrd

Pure python module for reading and writing NRRD files.
Papers that mentioned: 1

Very Likely Science (100)

pypi: pypes

An actor based programming framework
Papers that mentioned: 1

Very Likely Science (65)

pypi: hiveplot

Hive plots in Python!
Papers that mentioned: 1

Very Likely Science (80)

pypi: vagabond

python tool to create portable development environments
Papers that mentioned: 1

Very Likely Science (65)

pypi: every

Reserved for future.
Papers that mentioned: 1

Very Likely Science (65)

cran: SSDM

Stacked Species Distribution Modelling
Papers that mentioned: 1

Very Likely Science (100)

pypi: spectrogram

Spectrogram (80MHz bandwidth) accelerator for LimeSDR
Papers that mentioned: 1

Very Likely Science (65)

pypi: vak

a neural network toolbox for animal vocalizations and bioacoustics
Papers that mentioned: 1

Very Likely Science (100)

pypi: noisifier

Add label noise to your dataset
Papers that mentioned: 1

Very Likely Science (65)

cran: ssd

Sample Size Determination (SSD) for Unordered Categorical Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: ultraplex

fastq demultiplexer
Papers that mentioned: 1

Very Likely Science (100)

pypi: shortbred

ShortBRED: a system for profiling protein families of interest at very high specificity in shotgun meta’omic sequencing data
Papers that mentioned: 1

Very Likely Science (90)

pypi: lapels

Lapels - A remapper and annotator of in silico (pseudo) genome alignments
Papers that mentioned: 1

Very Likely Science (65)

pypi: spgl1

SPGL1: A solver for large-scale sparse reconstruction.
Papers that mentioned: 1

Very Likely Science (80)

cran: subplex

Unconstrained Optimization using the Subplex Algorithm
Papers that mentioned: 1

Very Likely Science (100)

pypi: pyramid-arima

Python's forecast::auto.arima equivalent
Papers that mentioned: 1

Very Likely Science (95)

pypi: logos

AI, NLP, and Data Science tools to facilitate efficient model development, testing, and sharing.
Papers that mentioned: 1

Very Likely Science (75)

pypi: nip

nip is environment isolation and installation for Node.js
Papers that mentioned: 1

Very Likely Science (65)

pypi: shot

Super micro web framework for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: nolearn

scikit-learn compatible neural network library
Papers that mentioned: 1

Very Likely Science (95)

cran: suddengains

Identify Sudden Gains in Longitudinal Data
Papers that mentioned: 1

Very Likely Science (81)

pypi: neurotic

Curate, visualize, annotate, and share your behavioral ephys data using Python
Papers that mentioned: 1

Very Likely Science (90)

cran: SuperPCA

Supervised Principal Component Analysis
Papers that mentioned: 1

Very Likely Science (60)

cran: SuperRanker

Sequential Rank Agreement
Papers that mentioned: 1

Very Likely Science (75)

pypi: xlmhg

XL-mHG: A Semiparametric Test for Enrichment
Papers that mentioned: 1

Very Likely Science (100)

pypi: loki

Simple model for galactic kinematics of low-mass stars
Papers that mentioned: 1

Very Likely Science (100)

cran: sugrrants

Supporting Graphs for Analysing Time Series
Papers that mentioned: 1

Very Likely Science (75)

pypi: pyRserve

A Python client to remotely access the R statistic package via network
Papers that mentioned: 1

Very Likely Science (90)