Packages with Software Mentions in Scientific Papers

Sequence Graph Transform (SGT) is a sequence embedding function. SGT extracts the short- and long-term sequence features and embeds them in a finite-dimensional feature space. The long and short term patterns embedded in SGT can be tuned without any increase in the computation.
Papers that mentioned: 1

Very Likely Science (71)

pypi: pypylon

The python wrapper for the Basler pylon Camera Software Suite.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pyproteome

Package for managing proteomics data
Papers that mentioned: 1

Very Likely Science (100)

pypi: ncbi-taxonomist

Toolbox to manage NCBI taxonomical data
Papers that mentioned: 1

Very Likely Science (100)

pypi: jyutping

Python tool to convert Chinese characters to Jyutping.
Papers that mentioned: 1

Very Likely Science (65)

cran: xray

X Ray Vision on your Datasets
Papers that mentioned: 1

Very Likely Science (75)

pypi: spgl1

SPGL1: A solver for large-scale sparse reconstruction.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pyramid-arima

Python's forecast::auto.arima equivalent
Papers that mentioned: 1

Very Likely Science (95)

pypi: Tobi

A package for KPU_ToBi
Papers that mentioned: 1

Very Likely Science (65)

pypi: PyRAS

Papers that mentioned: 1

Very Likely Science (80)

pypi: PyRat

Python ray tracing
Papers that mentioned: 1

Very Likely Science (90)

pypi: treefit

The first software for quantitative trajectory inference
Papers that mentioned: 1

Very Likely Science (80)

pypi: TOF-SIMS

Open and process 3D datasets generated by TESCAN FERA Xe plasma FIB-SEM with ToF-SIMS microscopes
Papers that mentioned: 1

Very Likely Science (80)

pypi: k4a

Python 3 bindings for the Azure Kinect SDK
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyreport

Pyreport makes notes out of a python script. It can run the script in a sandbox and capture its output. It allows for embedding RestructuredText or LaTeX comments in the code for literate programming and generates a report made of the literate comments, the code, pretty printed, and the output of the script (pyreport can capture pylab figures). This is useful for documentations, making tutorials, but also for sharing python-based calculations with colleagues.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pyret

Tools for the analysis of neural electrophysiology data
Papers that mentioned: 1

Very Likely Science (100)

cran: vscc

Variable Selection for Clustering and Classification
Papers that mentioned: 1

Very Likely Science (75)

pypi: spi

Pure Python SPI Interface using spidev
Papers that mentioned: 1

Very Likely Science (65)

pypi: jumpstart

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyRserve

A Python client to remotely access the R statistic package via network
Papers that mentioned: 1

Very Likely Science (90)

pypi: pyrtlsdr

A Python wrapper for librtlsdr (a driver for Realtek RTL2832U based SDR's)
Papers that mentioned: 1

Very Likely Science (65)

pypi: spidev

Python bindings for Linux SPI access through spidev
Papers that mentioned: 1

Likely Science (40)

pypi: Juicy

Juicy database python client
Papers that mentioned: 1

Very Likely Science (85)

cran: vrmlgen

Generate 3D visualizations for data exploration on the web
Papers that mentioned: 1

Very Likely Science (85)

pypi: spikeextractors

Python module for extracting recorded and spike sorted extracellular data from different file types and formats
Papers that mentioned: 1

Very Likely Science (100)

pypi: jpar

This tool helps to show the json data collected from different sources in a single format.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pysat

'Supports science analysis across disparate data platforms'
Papers that mentioned: 1

Very Likely Science (100)

cran: simplePHENOTYPES

Simulation of Pleiotropic, Linked and Epistatic Phenotypes
Papers that mentioned: 1

Very Likely Science (100)

pypi: spikeinterface

Python toolkit for analysis, visualization, and comparison of spike sorting output
Papers that mentioned: 1

Very Likely Science (90)

pypi: PyscesToolbox

A set of metabolic model analysis tools for PySCeS.
Papers that mentioned: 1

Very Likely Science (100)

pypi: strf

string format locals
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyscf

PySCF: Python-based Simulations of Chemistry Framework
Papers that mentioned: 1

Very Likely Science (90)

pypi: joint

joint rpc library
Papers that mentioned: 1

Very Likely Science (80)

pypi: pysha3

SHA-3 (Keccak) for Python 2.7 - 3.5
Papers that mentioned: 1

Very Likely Science (65)

pypi: playwright

A high-level API to automate web browsers
Papers that mentioned: 1

Very Likely Science (80)

pypi: jgraph

View graph data structures in the IPython notebook.
Papers that mentioned: 1

Very Likely Science (65)

pypi: jflow

Quantitative finance and econometric analysis
Papers that mentioned: 1

Very Likely Science (75)

pypi: toil-vg

UC Santa Cruz Computational Genomics Lab's Toil-based VG pipeline
Papers that mentioned: 1

Very Likely Science (75)

pypi: PySimpleGUI

Python GUIs for Humans. Launched in 2018. It's 2022 & PySimpleGUI is an ACTIVE & supported project. Super-simple to create custom GUI's. 325+ Demo programs & Cookbook for rapid start. Extensive documentation. Main docs at www.PySimpleGUI.org. Fun & your success are the focus. Examples using Machine Learning (GUI, OpenCV Integration), Rainmeter Style Desktop Widgets, Matplotlib + Pyplot, PIL support, add GUI to command line scripts, PDF & Image Viewers. Great for beginners & advanced GUI programmers.
Papers that mentioned: 1

Very Likely Science (90)

pypi: PyStanfordDependencies

Python interface for converting Penn Treebank trees to Universal Dependencies and Stanford Dependencies
Papers that mentioned: 1

Very Likely Science (90)

pypi: Longbow

Biomolecular simulation remote job submission tool.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pytabix

Python interface for tabix
Papers that mentioned: 1

Very Likely Science (80)

pypi: pytc

Tokyo Cabinet Python bindings
Papers that mentioned: 1

Very Likely Science (65)

pypi: spikesorters

Python wrappers for popular spike sorters
Papers that mentioned: 1

Very Likely Science (100)

pypi: PythonCyc

A Python interface to Pathway Tools, 2019 update
Papers that mentioned: 1

Very Likely Science (100)

pypi: jetpack

A package templating system.
Papers that mentioned: 1

Very Likely Science (65)

pypi: spiketoolkit

Python toolkit for analysis, visualization, and comparison of spike sorting output
Papers that mentioned: 1

Very Likely Science (95)

pypi: tokenizer

A tokenizer for Icelandic text
Papers that mentioned: 1

Very Likely Science (65)

pypi: SexMachine

Get the gender from first name.
Papers that mentioned: 1

Very Likely Science (65)

pypi: Pytheas

Framework for a fetch-and-send daemon.
Papers that mentioned: 1

Very Likely Science (65)

pypi: jenks

a jenkins command-line tool
Papers that mentioned: 1

Very Likely Science (65)

pypi: python-barcode

Create standard barcodes with Python. No external modules needed. (optional Pillow support included).
Papers that mentioned: 1

Very Likely Science (100)

cran: sensR

Thurstonian Models for Sensory Discrimination
Papers that mentioned: 1

Very Likely Science (75)

pypi: jenga

Jenga is an open source experimentation library that allows data science practititioners and researchers to study the effect of common data corruptions (e.g., missing values, broken character encodings) on the prediction quality of their ML models.
Papers that mentioned: 1

Very Likely Science (100)