Packages with Software Mentions in Scientific Papers | Ecosyste.ms: Papers

cran: gwsem

Papers that mentioned: 1

Unlikely Science (0)

pypi: mcgen

Python utilities for downloading and processing Minecraft's generated data.
Papers that mentioned: 1

Very Likely Science (65)

pypi: synchro

Customisable file transfers using rsync
Papers that mentioned: 1

Very Likely Science (85)

pypi: EmoPy

A deep neural net toolkit for emotion analysis via Facial Expression Recognition (FER)
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: genphen

Papers that mentioned: 1

Unlikely Science (0)

cran: meteR

Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)
Papers that mentioned: 1

Very Likely Science (97)

bioconductor: ideal

Interactive Differential Expression AnaLysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: mcheck

A python package that can be installed with pip.
Papers that mentioned: 1

Very Likely Science (65)

pypi: dyconnmap

A dynamic connectome mapping module in Python
Papers that mentioned: 1

Very Likely Science (100)

cran: KnowGRRF

Papers that mentioned: 1

Unlikely Science (0)

cran: sociome

Operationalizing Social Determinants of Health Data for Researchers
Papers that mentioned: 1

Very Likely Science (100)

cran: Knoema

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: dyebias

The GASSCO method for correcting for slide-dependent gene-specific dye bias
Papers that mentioned: 1

Very Likely Science (90)

pypi: Zp

Field Zp module
Papers that mentioned: 1

Very Likely Science (65)

cran: mixsep

Forensic Genetics DNA Mixture Separation
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: gpart

Papers that mentioned: 1

Unlikely Science (0)

pypi: aspect

Lightweight Aspect-oriented Module for Python
Papers that mentioned: 1

Very Likely Science (65)

cran: GPIC

Quantifying Group Performance in Individual Competitions
Papers that mentioned: 1

Very Likely Science (75)

pypi: offspring

Objects and patterns for working with processes in Python using the multiprocessing library
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: epigenomix

Epigenetic and gene transcription data normalization and integration with mixture models
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: epivizrChart

R interface to epiviz web components
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: multiGSEA

Combining GSEA-based pathway enrichment with multi omics data integration
Papers that mentioned: 1

Very Likely Science (100)

pypi: asq

LINQ-for-objects style queries for Python iterables.
Papers that mentioned: 1

Very Likely Science (65)

pypi: readtagger

Tags reads in a BAM file based on other BAM files.
Papers that mentioned: 1

Very Likely Science (100)

cran: mixIndependR

Genetics and Independence Testing of Mixed Genetic Panels
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: gaia

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: fastseg

fastseg - a fast segmentation algorithm
Papers that mentioned: 1

Very Likely Science (85)

pypi: terroir

terraform templating wrapper
Papers that mentioned: 1

Very Likely Science (65)

cran: MetaDBparse

Annotate Mass over Charge Values with Databases and Formula Prediction
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: Onassis

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: diffloop

Papers that mentioned: 1

Unlikely Science (0)

pypi: nidmfsl

Export of FSL statistical results using NIDM as specified at http://nidm.nidash.org/specs/nidm-results.html.
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: dualKS

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: MSGFgui

Papers that mentioned: 1

Unlikely Science (0)

cran: nardl

Nonlinear Cointegrating Autoregressive Distributed Lag Model
Papers that mentioned: 1

Very Likely Science (95)

bioconductor: mia

Microbiome analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: ghyp

Generalized Hyperbolic Distribution and Its Special Cases
Papers that mentioned: 1

Very Likely Science (75)

cran: auk

eBird Data Extraction and Processing in R
Papers that mentioned: 1

Very Likely Science (100)

cran: metro

Washington Metropolitan Area Transit Authority API
Papers that mentioned: 1

Very Likely Science (81)

pypi: endocal

A cross-platform, compact GUI application for the optical distortion calibration of fluid-immersed endoscopes.
Papers that mentioned: 1

Very Likely Science (100)

cran: MIXFIM

Evaluation of the FIM in NLMEMs using MCMC
Papers that mentioned: 1

Very Likely Science (75)

cran: mixdir

Cluster High Dimensional Categorical Datasets
Papers that mentioned: 1

Very Likely Science (85)

cran: GetoptLong

Parsing Command-Line Arguments and Simple Variable Interpolation
Papers that mentioned: 1

Likely Science (50)

cran: geofacet

'ggplot2' Faceting Utilities for Geographical Data
Papers that mentioned: 1

Very Likely Science (75)

cran: Gini

Gini Coefficient
Papers that mentioned: 1

Very Likely Science (75)

pypi: hq

Command-line tool for querying, slicing & dicing HTML using the XPath/XQuery derivative HQuery.
Papers that mentioned: 1

Very Likely Science (65)

pypi: jpar

This tool helps to show the json data collected from different sources in a single format.
Papers that mentioned: 1

Very Likely Science (65)

pypi: siggen

Experimental extraction of Socorro signature generation
Papers that mentioned: 1

Very Likely Science (75)

cran: denvax

Simple Dengue Test and Vaccinate Cost Thresholds
Papers that mentioned: 1

Very Likely Science (90)

cran: testit

A Simple Package for Testing R Packages
Papers that mentioned: 1

Very Likely Science (75)

pypi: Janome

Japanese morphological analysis engine.
Papers that mentioned: 1

Very Likely Science (75)

cran: vmr

Virtual Machines for R
Papers that mentioned: 1

Very Likely Science (75)

pypi: Nextcode

Nextcode sample processing tool
Papers that mentioned: 1

Very Likely Science (65)

pypi: crest

CLI to access RESTful service
Papers that mentioned: 1

Very Likely Science (65)

pypi: isimage

A module and scripts for analysis of whole-mount in-situ hybridisation images.
Papers that mentioned: 1

Very Likely Science (95)

cran: ssc

Semi-Supervised Classification Methods
Papers that mentioned: 1

Very Likely Science (95)

pypi: NeuroR

A morphology repair tool
Papers that mentioned: 1

Very Likely Science (100)

pypi: cove

UNKNOWN
Papers that mentioned: 1

Very Likely Science (80)

pypi: nway

Probabilistic Cross-Identification of Astronomical Sources
Papers that mentioned: 1

Very Likely Science (65)

cran: textclean

Text Cleaning Tools
Papers that mentioned: 1

Very Likely Science (100)

cran: textdata

Download and Load Various Text Datasets
Papers that mentioned: 1

Very Likely Science (85)

pypi: internet

Python library for working with IP addresses and other internet related functionalities
Papers that mentioned: 1

Very Likely Science (65)

pypi: intern

Python SDK for interacting with neuroscience data via the Boss API.
Papers that mentioned: 1

Very Likely Science (100)

pypi: maths

mathematical expression manipulation engine
Papers that mentioned: 1

Very Likely Science (75)

cran: Thermimage

Thermal Image Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: vimp

Perform Inference on Algorithm-Agnostic Variable Importance
Papers that mentioned: 1

Very Likely Science (100)

pypi: matid

MatID is a python package for identifying and analyzing atomistic systems based on their structure.
Papers that mentioned: 1

Very Likely Science (95)

pypi: sign

inherit **kwargs from another fucntion in the signature.
Papers that mentioned: 1

Very Likely Science (85)

pypi: viber

Papers that mentioned: 1

Very Likely Science (65)

pypi: util.py

Papers that mentioned: 1

Very Likely Science (65)

cran: TideHarmonics

Harmonic Analysis of Tides
Papers that mentioned: 1

Very Likely Science (85)

pypi: instance

Papers that mentioned: 1

Very Likely Science (65)

pypi: install

Install packages from within code
Papers that mentioned: 1

Very Likely Science (65)

cran: tidycwl

Tidy Common Workflow Language Tools and Workflows
Papers that mentioned: 1

Very Likely Science (75)

pypi: panphlan

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition and *in-vivo* transcriptional activity of individual strains in metagenomic samples. PanPhlAn’s ability for strain-tracking and functional analysis of unknown pathogens makes it an efficient tool for culture-free infectious outbreak epidemiology and microbial population studies.
Papers that mentioned: 1

Very Likely Science (85)

cran: tidygenomics

Tidy Verbs for Dealing with Genomic Data Frames
Papers that mentioned: 1

Very Likely Science (75)

pypi: Neuroharmony

A tool to perform Freesurfer volume Harminization in unseen scanner.
Papers that mentioned: 1

Very Likely Science (100)

cran: graphicalVAR

Graphical VAR for Experience Sampling Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: gpl

GPL is an unsupervised domain adaptation method for training dense retrievers. It is based on query generation and pseudo labeling with powerful cross-encoders. To train a domain-adapted model, it needs only the unlabeled target corpus and can achieve significant improvement over zero-shot models.
Papers that mentioned: 1

Very Likely Science (100)

pypi: oboe

An AutoML pipeline selection system to quickly select a promising pipeline for a new dataset.
Papers that mentioned: 1

Very Likely Science (100)

pypi: indexer

a RDBMS full text index library for python
Papers that mentioned: 1

Very Likely Science (65)

pypi: pcf

pcf
Papers that mentioned: 1

Very Likely Science (80)

pypi: timer

Python Code Timer
Papers that mentioned: 1

Very Likely Science (65)

pypi: pce

Polynomial Chaos Expansion method
Papers that mentioned: 1

Very Likely Science (75)

pypi: matchmaker

Easy creation of hamcrest matchers
Papers that mentioned: 1

Very Likely Science (65)

pypi: observable

minimalist event system
Papers that mentioned: 1

Very Likely Science (65)

pypi: triangulation

3D triangulation algorithms
Papers that mentioned: 1

Very Likely Science (95)

pypi: timeview

A GUI application to view and analyze time series signal data
Papers that mentioned: 1

Very Likely Science (100)

pypi: imgcrop

Simple image augmentation library focusing on random geometric cropping.
Papers that mentioned: 1

Very Likely Science (80)

cran: vegclust

Fuzzy Clustering of Vegetation Data
Papers that mentioned: 1

Very Likely Science (85)

cran: tigerstats

R Functions for Elementary Statistics
Papers that mentioned: 1

Very Likely Science (98)

cran: tightClust

Tight Clustering
Papers that mentioned: 1

Very Likely Science (83)

cran: vegawidget

'Htmlwidget' for 'Vega' and 'Vega-Lite'
Papers that mentioned: 1

Very Likely Science (95)

pypi: timsort

Timsort sorting algorithm with custom minrun
Papers that mentioned: 1

Very Likely Science (75)

pypi: SequenceAligner

FASTA sequence aligner - test
Papers that mentioned: 1

Very Likely Science (65)

pypi: tina

TINA Is Not Arif: A tool for tagging chef cookbooks and their dependencies.
Papers that mentioned: 1

Very Likely Science (65)

cran: tinytest

Lightweight and Feature Complete Unit Testing Framework
Papers that mentioned: 1

Very Likely Science (75)

pypi: Obsidian

Obsidian make web crawl easier
Papers that mentioned: 1

Very Likely Science (65)

pypi: informer

debug tool
Papers that mentioned: 1

Very Likely Science (85)

pypi: netplot

Ultralight 3D renderer of neural network architecture for TF/Keras Models
Papers that mentioned: 1

Very Likely Science (95)