Packages with Software Mentions in Scientific Papers

RNAlysis is an analysis software for RNA sequencing data. RNAlysis can help to filter, visualize, explore, analyze, and share your data.
Papers that mentioned: 1

Very Likely Science (90)

pypi: foot

Fetches a list of URLs and silly walks through each site to gather information.
Papers that mentioned: 1

Likely Science (40)

cran: nproc

Neyman-Pearson (NP) Classification Algorithms and NP Receiver Operating Characteristic (NP-ROC) Curves
Papers that mentioned: 1

Very Likely Science (85)

cran: mixRasch

Mixture Rasch Models with JMLE
Papers that mentioned: 1

Very Likely Science (75)

cran: microcontax

The ConTax Data Package
Papers that mentioned: 1

Very Likely Science (75)

pypi: imagescanner

Multi-platform Python library to access scanner devices.
Papers that mentioned: 1

Very Likely Science (65)

pypi: arcane

Python library for creating dynamic websites.
Papers that mentioned: 1

Likely Science (40)

cran: DSAIRM

Dynamical Systems Approach to Immune Response Modeling
Papers that mentioned: 1

Very Likely Science (100)

pypi: bump

Bumps package version numbers
Papers that mentioned: 1

Very Likely Science (65)

pypi: klar

a micro web framework
Papers that mentioned: 1

Very Likely Science (65)

pypi: bwplot

A package to prepare a plot for black and white printing
Papers that mentioned: 1

Very Likely Science (80)

cran: distory

Distance Between Phylogenetic Histories
Papers that mentioned: 1

Very Likely Science (85)

cran: DSAIDE

Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution)
Papers that mentioned: 1

Very Likely Science (100)

cran: norm2

Analysis of Incomplete Multivariate Data under a Normal Model
Papers that mentioned: 1

Very Likely Science (85)

pypi: bumps

Data fitting with bayesian uncertainty analysis
Papers that mentioned: 1

Very Likely Science (90)

cran: MultiRNG

Multivariate Pseudo-Random Number Generation
Papers that mentioned: 1

Very Likely Science (93)

pypi: brt

Business research tools
Papers that mentioned: 1

Likely Science (50)

pypi: BSG

Modulized version of BullshitGenerator. Original version see https://github.com/menzi11/BullshitGenerator
Papers that mentioned: 1

Very Likely Science (60)

cran: MultiJoin

Enables Efficient Joining of Data File on Common Fields using the Unix Utility Join
Papers that mentioned: 1

Likely Science (50)

pypi: gbseqextractor

Extract any CDS or rNRA or tRNA DNA sequences of genes from Genbank file.
Papers that mentioned: 1

Very Likely Science (80)

pypi: bunch

A dot-accessible dictionary (a la JavaScript objects)
Papers that mentioned: 1

Very Likely Science (65)

cran: dcminfo

Information Matrix for Diagnostic Classification Models
Papers that mentioned: 1

Very Likely Science (75)

pypi: alea

Papers that mentioned: 1

Very Likely Science (65)

cran: MixAll

Clustering and Classification using Model-Based Mixture Models
Papers that mentioned: 1

Very Likely Science (75)

pypi: RNFtools

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
Papers that mentioned: 1

Very Likely Science (100)

cran: ushr

Understanding Suppression of HIV
Papers that mentioned: 1

Very Likely Science (78)

cran: multiMarker

Latent Variable Model to Infer Food Intake from Multiple Biomarkers
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: ADImpute

Adaptive Dropout Imputer (ADImpute)
Papers that mentioned: 1

Very Likely Science (100)

pypi: echarts

A echarts Python project
Papers that mentioned: 1

Very Likely Science (65)

cran: DiffXTables

Pattern Analysis Across Contingency Tables
Papers that mentioned: 1

Very Likely Science (93)

pypi: rnaseqlib

RNA-Seq analysis pipeline
Papers that mentioned: 1

Very Likely Science (90)

pypi: pdf2text

A PDFMiner wrapper to ease the text extraction from pdf files.
Papers that mentioned: 1

Very Likely Science (100)

pypi: evolut

Permet de recupéré des informations que un compte evolut
Papers that mentioned: 1

Very Likely Science (65)

pypi: any

Command Line Interface for Anyscale
Papers that mentioned: 1

Very Likely Science (65)

pypi: bcdi

BCDI: tools for pre(post)-processing Bragg and
Papers that mentioned: 1

Very Likely Science (100)

pypi: aoa

Python client for Teradata AnalyticOps Accelerator (AOA)
Papers that mentioned: 1

Very Likely Science (65)

cran: diffeR

Metrics of Difference for Comparing Pairs of Maps or Pairs of Variables
Papers that mentioned: 1

Very Likely Science (83)

cran: DiagrammeRsvg

Export DiagrammeR Graphviz Graphs as SVG
Papers that mentioned: 1

Very Likely Science (70)

cran: VaRES

Computes Value at Risk and Expected Shortfall for over 100 Parametric Distributions
Papers that mentioned: 1

Very Likely Science (95)

pypi: rmm

Utilities for Dask and CUDA interactions
Papers that mentioned: 1

Very Likely Science (100)

pypi: indy

Interactive command-line fuzzy file search, based off how Ctrl-P works in Sublime Text
Papers that mentioned: 1

Very Likely Science (65)

pypi: ao

a minimal example package (pure python version)
Papers that mentioned: 1

Very Likely Science (65)

pypi: switches

Friendly Command Line Scripts
Papers that mentioned: 1

Very Likely Science (65)

pypi: gatool

Utility for console applications parameters adjustment with genetic algorithm
Papers that mentioned: 1

Likely Science (50)

pypi: merk

A concise implementation of a merkle tree
Papers that mentioned: 1

Very Likely Science (65)

pypi: edd-utils

Download Studies from an Experiment Data Depot Instance
Papers that mentioned: 1

Very Likely Science (100)

cran: Modalclust

Hierarchical Modal Clustering
Papers that mentioned: 1

Very Likely Science (83)

pypi: boutiques

Schema for describing bash command-line tools
Papers that mentioned: 1

Very Likely Science (91)

pypi: epicenter

Python Package for interacting with the Forio Epicenter Platform
Papers that mentioned: 1

Very Likely Science (65)

pypi: antools

Private library which is also free to public use. Its purpose is to be useful code keeper.
Papers that mentioned: 1

Likely Science (40)

pypi: botox

Boto3 Extended
Papers that mentioned: 1

Very Likely Science (65)

pypi: Bother

A script to produce heightmaps (primarily for OpenTTD) using real-world elevation data.
Papers that mentioned: 1

Very Likely Science (65)

pypi: Anemone

Monitor long running analyses by remote plotting of selected variables
Papers that mentioned: 1

Very Likely Science (90)

pypi: mergedb

Papers that mentioned: 1

Very Likely Science (65)

pypi: paramap

Easily map flat dictionaries to object representations
Papers that mentioned: 1

Very Likely Science (65)

cran: openSTARS

An Open Source Implementation of the 'ArcGIS' Toolbox 'STARS'
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: TreeSummarizedExperiment

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures
Papers that mentioned: 1

Very Likely Science (85)

pypi: retrofit

AutoML, Forecasting, NLP, Image Classification, Feature Engineering, Model Evaluation, Model Interpretation, Fast Processing.
Papers that mentioned: 1

Likely Science (40)

cran: longitudinalcascade

Longitudinal Cascade
Papers that mentioned: 1

Very Likely Science (75)

pypi: fully

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: traseR

GWAS trait-associated SNP enrichment analyses in genomic intervals
Papers that mentioned: 1

Very Likely Science (100)

cran: lmeSplines

Add Smoothing Spline Modelling Capability to 'nlme'
Papers that mentioned: 1

Very Likely Science (93)

pypi: nidm

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: TFutils

TFutils
Papers that mentioned: 1

Very Likely Science (83)

pypi: paragraph

A computation graph micro-framework providing seamless lazy and concurrent evaluation.
Papers that mentioned: 1

Very Likely Science (65)

pypi: boolean

Converts string to their equivalent boolean value
Papers that mentioned: 1

Very Likely Science (65)

pypi: restore

restore
Papers that mentioned: 1

Very Likely Science (65)

pypi: ogr

One API for multiple git forges.
Papers that mentioned: 1

Very Likely Science (85)

cran: matchingMarkets

Analysis of Stable Matchings
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: spkTools

Methods for Spike-in Arrays
Papers that mentioned: 1

Very Likely Science (90)

pypi: bomb

Web frond-end publish tools
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: SNAGEE

Signal-to-Noise applied to Gene Expression Experiments
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: sincell

R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data
Papers that mentioned: 1

Very Likely Science (100)

pypi: s-tui

Stress Terminal UI stress test and monitoring tool
Papers that mentioned: 1

Very Likely Science (60)

cran: MatchLinReg

Combining Matching and Linear Regression for Causal Inference
Papers that mentioned: 1

Very Likely Science (85)

pypi: ssim

IATA SSIM (Standard Schedules Information Manual) file parser is a tool to read the standard IATA file format.
Papers that mentioned: 1

Very Likely Science (65)

pypi: swat

SAS Scripting Wrapper for Analytics Transfer (SWAT)
Papers that mentioned: 1

Very Likely Science (70)

pypi: paragon

A tiny command line benchmarking utility
Papers that mentioned: 1

Likely Science (40)

pypi: fso

File System Overlay - filesystem layering for unit testing
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: scTHI

Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: scTensor

Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: scruff

Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Papers that mentioned: 1

Very Likely Science (100)

pypi: reviewer

Easily create and manage gitlab merge requests from the commandline
Papers that mentioned: 1

Very Likely Science (65)

pypi: ment

python library to write daily log in markdown quickly and to synthesize daily logs based on category
Papers that mentioned: 1

Very Likely Science (65)

pypi: resourcer

A simple wrapper around 'requests'
Papers that mentioned: 1

Very Likely Science (65)

pypi: fsk

Papers that mentioned: 1

Very Likely Science (65)

pypi: perc

This module calculates percentages (based on two numbers) and gives the option to include a decimal point declaration while defaulting to two
Papers that mentioned: 1

Very Likely Science (65)

pypi: bmtools

System informations
Papers that mentioned: 1

Very Likely Science (65)

cran: maxnodf

Approximate Maximisation of Nestedness in Bipartite Graphs
Papers that mentioned: 1

Very Likely Science (75)