Packages with Software Mentions in Scientific Papers

A unified set of analysis and visualization tools intended for gene expression studies in Python, and an interface to the R ExpressionSet.
Papers that mentioned: 1

Very Likely Science (75)

pypi: proteus

Library to access Tryton server as a client
Papers that mentioned: 1

Very Likely Science (65)

pypi: petl

A Python package for extracting, transforming and loading tables of data.
Papers that mentioned: 1

Very Likely Science (100)

pypi: proxmox

Papers that mentioned: 1

Unlikely Science (0)

pypi: vida

Python binding for Vida data visualizations
Papers that mentioned: 1

Very Likely Science (95)

pypi: eQTLseq

Hierarchical probabilistic models for multiple gene/variant associations based on NGS data
Papers that mentioned: 1

Very Likely Science (90)

pypi: pssm

Python library for state-space models
Papers that mentioned: 1

Very Likely Science (65)

pypi: gcloud

API Client library for Google Cloud
Papers that mentioned: 1

Very Likely Science (100)

pypi: dream

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

pypi: pvr

Papers that mentioned: 1

Unlikely Science (0)

pypi: py2

Turns Python into a versatile command line utility
Papers that mentioned: 1

Likely Science (40)

pypi: dtscalibration

A Python package to load raw DTS files, perform a calibration, and plot the result.
Papers that mentioned: 1

Very Likely Science (80)

pypi: rtdpy

Python package for residence time distribution analysis
Papers that mentioned: 1

Very Likely Science (90)

pypi: censys

An easy-to-use and lightweight API wrapper for Censys APIs (censys.io).
Papers that mentioned: 1

Very Likely Science (100)

pypi: PyAutoGUI

PyAutoGUI lets Python control the mouse and keyboard, and other GUI automation tasks. For Windows, macOS, and Linux, on Python 3 and 2.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pybeach

A Python package for locating the dune toe on cross-shore beach profile transects.
Papers that mentioned: 1

Very Likely Science (65)

pypi: centreseq

Fast generation of a core genome among bacterial strains
Papers that mentioned: 1

Very Likely Science (100)

pypi: ie

Validation of brazilian state registration numbers
Papers that mentioned: 1

Very Likely Science (60)

pypi: pycld2

Python bindings around Google Chromium's embedded compact language detection library (CLD2)
Papers that mentioned: 1

Very Likely Science (80)

pypi: pycryptodomex

Cryptographic library for Python
Papers that mentioned: 1

Very Likely Science (100)

pypi: eda

A Python framework for event-driven architectures.
Papers that mentioned: 1

Very Likely Science (65)

pypi: fuzzer

Python wrapper for multiarch AFL
Papers that mentioned: 1

Very Likely Science (65)

pypi: FuXi

An OWL / N3-based in-memory, logic reasoning system for RDF
Papers that mentioned: 1

Very Likely Science (65)

pypi: micromeritics

Python package for gas adsorption calculations and support tools.
Papers that mentioned: 1

Very Likely Science (65)

pypi: volcano

Volcano Library
Papers that mentioned: 1

Likely Science (40)

pypi: pydantic

Data validation using Python type hints
Papers that mentioned: 1

Very Likely Science (100)

pypi: Cepheus

Cepheus, son of Agenor. A program to analyze cepheid variable stars.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pycparser

C parser in Python
Papers that mentioned: 1

Very Likely Science (85)

pypi: pycsw

pycsw is an OGC CSW server implementation written in Python
Papers that mentioned: 1

Very Likely Science (80)

pypi: pycwt

Continuous wavelet transform module for Python.
Papers that mentioned: 1

Very Likely Science (80)

cran: riskCommunicator

G-Computation to Estimate Interpretable Epidemiological Effects
Papers that mentioned: 1

Likely Science (50)

pypi: cerebra

finds mutants in your scRNA-seq experiment
Papers that mentioned: 1

Very Likely Science (90)

pypi: fromage

FRamewOrk for Molecular AGgregate Excitations
Papers that mentioned: 1

Very Likely Science (75)

pypi: frogs

Papers that mentioned: 1

Very Likely Science (65)

pypi: pyedf

Papers that mentioned: 1

Unlikely Science (0)

pypi: staNMF

python 2.7 implementation of stability NMF (Siqi Wu 2016)
Papers that mentioned: 1

Very Likely Science (100)

pypi: friendly

Friendlier tracebacks in any language.
Papers that mentioned: 1

Very Likely Science (65)

pypi: micropath

The micropath Web Application Framework
Papers that mentioned: 1

Very Likely Science (85)

pypi: Pygments

Pygments is a syntax highlighting package written in Python.
Papers that mentioned: 1

Very Likely Science (100)

pypi: cflib

Crazyflie python driver
Papers that mentioned: 1

Very Likely Science (100)

pypi: MicroPipe

A package for automated microbe bioinfomatics Analysis
Papers that mentioned: 1

Very Likely Science (75)

pypi: pygames

Papers that mentioned: 1

Unlikely Science (0)

pypi: cflib-pomo

Counts file library and conversion scripts.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pygarrayimage

Allow numpy arrays as source of texture data for pyglet.
Papers that mentioned: 1

Very Likely Science (65)

pypi: rtg

Reader Translator Generator(RTG), a Neural Machine Translator(NMT) toolkit based on Pytorch
Papers that mentioned: 1

Very Likely Science (100)

pypi: pyiron

pyiron - an integrated development environment (IDE) for computational materials science.
Papers that mentioned: 1

Very Likely Science (100)

cran: Rlabkey

Data Exchange Between R and 'LabKey' Server
Papers that mentioned: 1

Very Likely Science (80)

cran: RImageJROI

Read 'ImageJ' Region of Interest (ROI) Files
Papers that mentioned: 1

Very Likely Science (100)

pypi: vir

Papers that mentioned: 1

Unlikely Science (0)

pypi: geotiff

A noGDAL tool for reading and writing geotiff files
Papers that mentioned: 1

Very Likely Science (80)

pypi: pylexirumah

programmatic access to lexirumah-data
Papers that mentioned: 1

Very Likely Science (65)

pypi: tmm

Simulate light propagation in multilayer thin and/or thick films using the fresnel equations and transfer matrix method.
Papers that mentioned: 1

Very Likely Science (80)

pypi: timex

A time expressions library implementing a mini-language for manipulating datetimes
Papers that mentioned: 1

Very Likely Science (100)

pypi: viewpoint

A simple blog with hooks for categories, tinymce, tags and other things
Papers that mentioned: 1

Likely Science (40)

pypi: enum

Robust enumerated type support in Python.
Papers that mentioned: 1

Very Likely Science (65)

GeoViews is a Python library that makes it easy to explore and visualize geographical, meteorological, and oceanographic datasets, such as those used in weather, climate, and remote sensing research.
Papers that mentioned: 1

Very Likely Science (90)

pypi: stud

Package management utilities
Papers that mentioned: 1

Very Likely Science (65)

pypi: tmtk

A toolkit for ETL curation for the tranSMART data warehouse.
Papers that mentioned: 1

Very Likely Science (100)

pypi: zbar

read barcodes from images or video
Papers that mentioned: 1

Very Likely Science (80)

pypi: cgat

cgat : the Computational Genomics Analysis Toolkit
Papers that mentioned: 1

Very Likely Science (90)

pypi: epidemiology

Wrapper to APIs for Epidemiologists
Papers that mentioned: 1

Very Likely Science (65)

pypi: GetIsolationSources

Retrieves isolation sources from NCBI given the set of sequences with specified accession numbers. Both nucleotide and protein accessions are accepted.
Papers that mentioned: 1

Likely Science (55)

pypi: ToE

An edge-cloud collaborative training system for CNN and other DNNs.
Papers that mentioned: 1

Very Likely Science (65)

pypi: toffee

Toffee: Test Object Fixture Factories - easy creation of data fixtures for tests
Papers that mentioned: 1

Very Likely Science (65)

pypi: tokenizers

💥 Fast State-of-the-Art Tokenizers optimized for Research and Production
Papers that mentioned: 1

Very Likely Science (100)

pypi: pymvpa2

Multivariate pattern analysis
Papers that mentioned: 1

Very Likely Science (75)

pypi: PyPrismatic

Python wrapper for Prismatic package for fast image simulation using the PRISM and multislice algorithms in Scanning Transmission Electron Microscopy (STEM)
Papers that mentioned: 1

Very Likely Science (75)