Packages with Software Mentions in Scientific Papers

Optimum Library is an extension of the Hugging Face Transformers library, providing a framework to integrate third-party libraries from Hardware Partners and interface with their specific functionality.
Papers that mentioned: 1

Very Likely Science (100)

pypi: optimtool

The fundamental package for scientific research in optimization.
Papers that mentioned: 1

Very Likely Science (100)

cran: CarletonStats

Functions for Statistics Classes at Carleton College
Papers that mentioned: 1

Very Likely Science (100)

cran: SIHR

Statistical Inference in High Dimensional Regression
Papers that mentioned: 1

Very Likely Science (68)

cran: coxed

Duration-Based Quantities of Interest for the Cox Proportional Hazards Model
Papers that mentioned: 1

Very Likely Science (100)

cran: LinkedMatrix

Column-Linked and Row-Linked Matrices
Papers that mentioned: 1

Very Likely Science (77)

cran: carSurv

Correlation-Adjusted Regression Survival (CARS) Scores
Papers that mentioned: 1

Very Likely Science (93)

cran: CPBayes

Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations
Papers that mentioned: 1

Very Likely Science (99)

cran: cpk

Clinical Pharmacokinetics
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: CellScore

Tool for Evaluation of Cell Identity from Transcription Profiles
Papers that mentioned: 1

Very Likely Science (90)

pypi: mobi

unpack unencrypted mobi files
Papers that mentioned: 1

Very Likely Science (80)

cran: cprobit

Conditional Probit Model for Analysing Continuous Outcomes
Papers that mentioned: 1

Very Likely Science (75)

cran: SIMMS

Subnetwork Integration for Multi-Modal Signatures
Papers that mentioned: 1

Very Likely Science (93)

cran: simode

Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching
Papers that mentioned: 1

Very Likely Science (85)

cran: crch

Censored Regression with Conditional Heteroscedasticity
Papers that mentioned: 1

Very Likely Science (85)

cran: linkprediction

Link Prediction Methods
Papers that mentioned: 1

Very Likely Science (100)

cran: SimRVPedigree

Simulate Pedigrees Ascertained for a Rare Disease
Papers that mentioned: 1

Very Likely Science (75)

cran: crispRdesignR

Guide Sequence Design for CRISPR/Cas9
Papers that mentioned: 1

Very Likely Science (89)

cran: crop

Graphics Cropping Tool
Papers that mentioned: 1

Very Likely Science (85)

cran: linpk

Generate Concentration-Time Profiles from Linear PK Systems
Papers that mentioned: 1

Very Likely Science (75)

pypi: CoilMQ

Simple, lightweight, and easily extensible STOMP message broker.
Papers that mentioned: 1

Likely Science (55)

cran: StrainRanking

Ranking of Pathogen Strains
Papers that mentioned: 1

Very Likely Science (75)

pypi: lzip

Lzip (.lz) archives compression and decompression with buffers and URLs support
Papers that mentioned: 1

Very Likely Science (100)

pypi: elsa

Helper module for Frozen-Flask based websites
Papers that mentioned: 1

Likely Science (40)

cran: catIrt

Simulate IRT-Based Computerized Adaptive Tests
Papers that mentioned: 1

Very Likely Science (97)

pypi: Ibidas

Ibidas is an environment for data handling and exploration, able to cope with different data structures and sources
Papers that mentioned: 1

Very Likely Science (65)

cran: cryst

Calculate the Relative Crystallinity of Starch by XRD and FTIR
Papers that mentioned: 1

Very Likely Science (75)

pypi: identifier

A utility for identifier
Papers that mentioned: 1

Likely Science (40)

cran: ctrlGene

Assess the Stability of Candidate Housekeeping Genes
Papers that mentioned: 1

Very Likely Science (75)

cran: designmatch

Matched Samples that are Balanced and Representative by Design
Papers that mentioned: 1

Very Likely Science (83)

cran: listdtr

List-Based Rules for Dynamic Treatment Regimes
Papers that mentioned: 1

Very Likely Science (75)

pypi: MoCV

List and details of Computer Vision algorithms
Papers that mentioned: 1

Very Likely Science (75)

pypi: iget

A small CLI
Papers that mentioned: 1

Very Likely Science (65)

cran: skewt

The Skewed Student-t Distribution
Papers that mentioned: 1

Very Likely Science (75)

cran: lmDiallel

Linear Fixed/Mixed Effects Models for Diallel Crosses
Papers that mentioned: 1

Very Likely Science (85)

cran: D3GB

Interactive Genome Browser with R
Papers that mentioned: 1

Very Likely Science (75)

cran: DAKS

Data Analysis and Knowledge Spaces
Papers that mentioned: 1

Very Likely Science (85)

cran: rules

Model Wrappers for Rule-Based Models
Papers that mentioned: 1

Very Likely Science (83)

pypi: scale

Single-Cell ATAC-seq Analysis via Latent feature Extraciton
Papers that mentioned: 1

Very Likely Science (96)

pypi: colab

Collaboration platform for communities
Papers that mentioned: 1

Very Likely Science (100)

pypi: collage

Creates collages of miniature images that resemble the originals.
Papers that mentioned: 1

Very Likely Science (65)

pypi: moda

Tools for analyzing trending topics
Papers that mentioned: 1

Very Likely Science (65)

pypi: modAL

Python client library for Modal
Papers that mentioned: 1

Very Likely Science (65)

cran: data360r

Wrapper for 'TCdata360' and 'Govdata360' API
Papers that mentioned: 1

Very Likely Science (75)

cran: DataLoader

Import Multiple File Types
Papers that mentioned: 1

Very Likely Science (83)

cran: SMDIC

Identification of Somatic Mutation-Driven Immune Cells
Papers that mentioned: 1

Very Likely Science (75)

cran: ccChooser

Developing a core collections
Papers that mentioned: 1

Very Likely Science (75)

pypi: emacs

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

cran: dbd

Discretised Beta Distribution
Papers that mentioned: 1

Very Likely Science (83)

cran: DCchoice

Analyzing Dichotomous Choice Contingent Valuation Data
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: BasicSTARRseq

Basic peak calling on STARR-seq data
Papers that mentioned: 1

Very Likely Science (90)

pypi: podcasts

Parse podcasts with Python
Papers that mentioned: 1

Very Likely Science (65)

cran: DCL

Claims Reserving under the Double Chain Ladder Model
Papers that mentioned: 1

Very Likely Science (75)

cran: smoother

Functions Relating to the Smoothing of Numerical Data
Papers that mentioned: 1

Very Likely Science (93)

cran: smog

Structural Modeling by using Overlapped Group Penalty
Papers that mentioned: 1

Very Likely Science (100)

cran: DDHFm

Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
Papers that mentioned: 1

Very Likely Science (93)

pypi: Toto

A Tornado based framework designed to accelerate web service development
Papers that mentioned: 1

Very Likely Science (65)

cran: snapshot

Gadget N-body cosmological simulation code snapshot I/O utilities
Papers that mentioned: 1

Very Likely Science (93)

cran: deepredeff

Deep Learning Prediction of Effectors
Papers that mentioned: 1

Very Likely Science (91)

cran: Delaporte

Statistical Functions for the Delaporte Distribution
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: periodicDNA

Set of tools to identify periodic occurrences of k-mers in DNA sequences
Papers that mentioned: 1

Very Likely Science (100)

cran: envirem

Generation of ENVIREM Variables
Papers that mentioned: 1

Very Likely Science (97)

cran: barcode

Render Barcode Distribution Plots
Papers that mentioned: 1

Very Likely Science (83)

cran: BarcodingR

Species Identification using DNA Barcodes
Papers that mentioned: 1

Very Likely Science (83)

cran: desplot

Plotting Field Plans for Agricultural Experiments
Papers that mentioned: 1

Very Likely Science (91)

cran: dixon

Nearest Neighbour Contingency Table Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: summation

Module for number summation
Papers that mentioned: 1

Very Likely Science (65)

pypi: colomoto-docker

Helper script to run docker image colomoto/colomoto-docker
Papers that mentioned: 1

Very Likely Science (100)

cran: Dict

R6 Based Key-Value Dictionary Implementation
Papers that mentioned: 1

Very Likely Science (75)

pypi: colon

Papers that mentioned: 1

Very Likely Science (65)

cran: SOPIE

Non-Parametric Estimation of the Off-Pulse Interval of a Pulsar
Papers that mentioned: 1

Very Likely Science (83)

cran: dfped

Extrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies
Papers that mentioned: 1

Very Likely Science (79)

cran: dglars

Differential Geometric Least Angle Regression
Papers that mentioned: 1

Very Likely Science (85)

cran: dhga

Differential Hub Gene Analysis
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: plotGrouper

Shiny app GUI wrapper for ggplot with built-in statistical analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: runstats

Fast Computation of Running Statistics for Time Series
Papers that mentioned: 1

Very Likely Science (100)

cran: Runuran

R Interface to the 'UNU.RAN' Random Variate Generators
Papers that mentioned: 1

Very Likely Science (83)

pypi: colorcet

Collection of perceptually uniform colormaps
Papers that mentioned: 1

Very Likely Science (71)

cran: dietr

Diet Estimated Trophic Levels
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: podkat

Position-Dependent Kernel Association Test
Papers that mentioned: 1

Very Likely Science (90)

cran: DiallelAnalysisR

Diallel Analysis with R
Papers that mentioned: 1

Very Likely Science (85)

cran: DiceKriging

Kriging Methods for Computer Experiments
Papers that mentioned: 1

Very Likely Science (85)

pypi: modelspec

A common JSON/YAML based format for compact model specification
Papers that mentioned: 1

Very Likely Science (80)

cran: spacesXYZ

CIE XYZ and some of Its Derived Color Spaces
Papers that mentioned: 1

Very Likely Science (75)

pypi: modem

Modem implementations for XMODEM, YMODEM and ZMODEM
Papers that mentioned: 1

Very Likely Science (65)

cran: DIGSS

Determination of Intervals Using Georeferenced Survey Simulation
Papers that mentioned: 1

Very Likely Science (95)

pypi: modest

A modular estimation library
Papers that mentioned: 1

Very Likely Science (65)

cran: Dire

Linear Regressions with a Latent Outcome Variable
Papers that mentioned: 1

Very Likely Science (100)