Packages with Software Mentions in Scientific Papers

pypi: pyproteome

Package for managing proteomics data
Papers that mentioned: 1

Very Likely Science (100)

pypi: Overseer

A status board built with Django
Papers that mentioned: 1

Very Likely Science (65)

Pyreport makes notes out of a python script. It can run the script in a sandbox and capture its output. It allows for embedding RestructuredText or LaTeX comments in the code for literate programming and generates a report made of the literate comments, the code, pretty printed, and the output of the script (pyreport can capture pylab figures). This is useful for documentations, making tutorials, but also for sharing python-based calculations with colleagues.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pyret

Tools for the analysis of neural electrophysiology data
Papers that mentioned: 1

Very Likely Science (100)

pypi: py2bit

A package for accessing 2bit files using lib2bit
Papers that mentioned: 1

Very Likely Science (80)

pypi: spi

Pure Python SPI Interface using spidev
Papers that mentioned: 1

Very Likely Science (65)

pypi: soma-workflow

Soma-Workflow. A unified and simple interface to parallel computing resource
Papers that mentioned: 1

Very Likely Science (80)

pypi: spicy

Because spellchecker. SciPy at your fingertips
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyRMSD

pyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of structures. It is specially tuned to do fast collective RMSD calculations, as pairwise RMSD matrices.
Papers that mentioned: 1

Very Likely Science (85)

pypi: PyRNA

View RNA secondary structure and BLAST search it for identification
Papers that mentioned: 1

Very Likely Science (80)

pypi: PWH

Web framework for code to be moved between ASP/PSP with an integrated database ORM
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyRserve

A Python client to remotely access the R statistic package via network
Papers that mentioned: 1

Very Likely Science (90)

pypi: pyrtlsdr

A Python wrapper for librtlsdr (a driver for Realtek RTL2832U based SDR's)
Papers that mentioned: 1

Very Likely Science (65)

pypi: spidev

Python bindings for Linux SPI access through spidev
Papers that mentioned: 1

Likely Science (40)

pypi: normalization

Text normalization module for natural language processing
Papers that mentioned: 1

Very Likely Science (65)

pypi: solv

A free package dependency solver using a satisfiability algorithm.
Papers that mentioned: 1

Very Likely Science (75)

pypi: spikeextractors

Python module for extracting recorded and spike sorted extracellular data from different file types and formats
Papers that mentioned: 1

Very Likely Science (100)

pypi: pulsar

Event driven concurrent framework for Python
Papers that mentioned: 1

Very Likely Science (80)

pypi: pysat

'Supports science analysis across disparate data platforms'
Papers that mentioned: 1

Very Likely Science (100)

pypi: Overdrive

Harness Drive's realtime API to collaborate in your favorite editor
Papers that mentioned: 1

Very Likely Science (65)

pypi: spikeinterface

Python toolkit for analysis, visualization, and comparison of spike sorting output
Papers that mentioned: 1

Very Likely Science (90)

pypi: PyscesToolbox

A set of metabolic model analysis tools for PySCeS.
Papers that mentioned: 1

Very Likely Science (100)

pypi: strf

string format locals
Papers that mentioned: 1

Very Likely Science (65)

pypi: spikely

Spike sorting made simple
Papers that mentioned: 1

Very Likely Science (100)

pypi: stPlus

stPlus: reference-based enhancement of spatial transcriptomics
Papers that mentioned: 1

Very Likely Science (100)

pypi: OUTLIERS

OUTLIERS ARE THE VALUES WHICH DISTORT OUR RESULTS AND NEED TO BE CATERED FOR
Papers that mentioned: 1

Very Likely Science (65)

pypi: publish

Publish python package to PyPI and Github
Papers that mentioned: 1

Very Likely Science (65)

pypi: ptrans

A command line tool help you trans other lauguages to Chinese each other
Papers that mentioned: 1

Very Likely Science (65)

pypi: PyStanfordDependencies

Python interface for converting Penn Treebank trees to Universal Dependencies and Stanford Dependencies
Papers that mentioned: 1

Very Likely Science (90)

pypi: ptrace

C extension providing access to ptrace(2)
Papers that mentioned: 1

Very Likely Science (80)

pypi: pytabix

Python interface for tabix
Papers that mentioned: 1

Very Likely Science (80)

pypi: pytc

Tokyo Cabinet Python bindings
Papers that mentioned: 1

Very Likely Science (65)

pypi: spikesorters

Python wrappers for popular spike sorters
Papers that mentioned: 1

Very Likely Science (100)

pypi: PythonCyc

A Python interface to Pathway Tools, 2019 update
Papers that mentioned: 1

Very Likely Science (100)

pypi: ptools

Cross Platform Process Infomation (cmdline, environ) and Management
Papers that mentioned: 1

Very Likely Science (65)

pypi: spiketoolkit

Python toolkit for analysis, visualization, and comparison of spike sorting output
Papers that mentioned: 1

Very Likely Science (95)

pypi: wf

wf
Papers that mentioned: 1

Very Likely Science (65)

pypi: pydoit

Wrapper around the i-doit API
Papers that mentioned: 1

Very Likely Science (65)

pypi: Pytheas

Framework for a fetch-and-send daemon.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyDOE2

Design of experiments for Python
Papers that mentioned: 1

Very Likely Science (100)

pypi: python-barcode

Create standard barcodes with Python. No external modules needed. (optional Pillow support included).
Papers that mentioned: 1

Very Likely Science (100)

pypi: wflow

wflow hydrological modeling framework
Papers that mentioned: 1

Very Likely Science (90)

pypi: python-graph

A library for working with graphs in Python
Papers that mentioned: 1

Very Likely Science (80)

pypi: pythongrid

High-level python wapper for the Sun Grid Engine (SGE) using DRMAA and ZMQ
Papers that mentioned: 1

Very Likely Science (65)

pypi: pydnsbl

Async dnsbl lists checker based on asyncio/aiodns.
Papers that mentioned: 1

Very Likely Science (65)

pypi: python-rocksdb

Python bindings for RocksDB
Papers that mentioned: 1

Very Likely Science (65)

pypi: solc

placeholder
Papers that mentioned: 1

Very Likely Science (65)

pypi: pstack

Tool to print python thread and greenlet stacks
Papers that mentioned: 1

Likely Science (40)

pypi: pytleap

Interface to connect to a TP-Link EAP.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pytl

Command line tool that parses python file, enumerates classes and methods as a tree structure.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pytoda

pytoda: PaccMann PyTorch Dataset Classes.
Papers that mentioned: 1

Very Likely Science (80)

pypi: wgdi

Whole Genome Duplication Identification
Papers that mentioned: 1

Very Likely Science (90)

pypi: pytsa

Simple, human-readable, fully tested, signature-preserving Python decorators to ensure your method abides to its contract.
Papers that mentioned: 1

Very Likely Science (65)

pypi: SpiNNakerGraphFrontEnd

Front end to the SpiNNaker tool chain which uses a basic graph
Papers that mentioned: 1

Very Likely Science (100)

pypi: PyTumblr

A Python Tumblr API v2 Client
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyTTE

Package to compute X-ray diffraction curves of bent crystals by numerically solving the 1D Takagi-Taupin equation.
Papers that mentioned: 1

Very Likely Science (85)

pypi: whale

Korean programming language for elementary education
Papers that mentioned: 1

Very Likely Science (65)

pypi: ptitprince

A Python implementation of Rainclouds, originally on R, ggplot2. Written on top of seaborn.
Papers that mentioned: 1

Very Likely Science (90)

pypi: pyvjoy

Python bindings for vJoy
Papers that mentioned: 1

Very Likely Science (65)

pypi: wide

decomposition tools
Papers that mentioned: 1

Very Likely Science (65)

pypi: spitz

The reference python implementation of the SPITS programming model
Papers that mentioned: 1

Very Likely Science (100)

pypi: PyWavefront

Python library for importing Wavefront .obj files
Papers that mentioned: 1

Very Likely Science (100)

pypi: pywindow

My short description for my project.
Papers that mentioned: 1

Very Likely Science (65)

pypi: PyX

Python package for the generation of PostScript, PDF, and SVG files
Papers that mentioned: 1

Very Likely Science (80)

pypi: spl

Spigot/Bukkit Plugin Manager
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyxmolpp2

Utils for processing MD
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyzotero

Python wrapper for the Zotero API
Papers that mentioned: 1

Very Likely Science (100)

pypi: PSNN

Python Simple Neural Network - PSNN is python3 lib for machine learning
Papers that mentioned: 1

Very Likely Science (75)

pypi: srd

Modele de simulation du revenu disponible Quebec
Papers that mentioned: 1

Very Likely Science (75)

pypi: ps_mem

A utility to report core memory usage per program
Papers that mentioned: 1

Likely Science (40)

pypi: sola

Customize the solarized theme for your terminal
Papers that mentioned: 1

Very Likely Science (65)

pypi: q2-micom

QIIME 2 plugin for metabolic modeling of microbial communities.
Papers that mentioned: 1

Very Likely Science (100)

pypi: storage

Libraries to interact with Enterprise Storage Arrays, FC Switches and Servers.
Papers that mentioned: 1

Likely Science (40)

pypi: QAD

Quick and dirty web app scanner
Papers that mentioned: 1

Very Likely Science (65)

pypi: wiggelen

Working with wiggle tracks in Python
Papers that mentioned: 1

Very Likely Science (80)

pypi: QBroker

QBroker is a minimal async wrapper for RPC via AMQP
Papers that mentioned: 1

Likely Science (40)

pypi: strict

Type and subject matter checks for functions and classes.
Papers that mentioned: 1

Very Likely Science (65)

pypi: psc

A cli credential/secret storage utility using EC2 SSM Parameter Store
Papers that mentioned: 1

Likely Science (40)

pypi: simplify

Produce simplified likelihoods of different formats
Papers that mentioned: 1

Very Likely Science (96)

pypi: QGL

Quantum Gate Language (QGL) is a domain specific language embedded in python for specifying pulse sequences.
Papers that mentioned: 1

Very Likely Science (80)

pypi: psamm

PSAMM metabolic modeling tools
Papers that mentioned: 1

Very Likely Science (100)

pypi: QLog

Logger
Papers that mentioned: 1

Very Likely Science (65)

pypi: qic

data(JSON/XML/YAML) command line query tools with interactive mode.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pstat

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

pypi: Wigman

A package to plot genomic scores
Papers that mentioned: 1

Very Likely Science (75)

pypi: prov

A library for W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)
Papers that mentioned: 1

Very Likely Science (100)

pypi: protosearch

Software for enumerating crystal structure prototypes to by used for active learning exploration with DFT and machine learning.
Papers that mentioned: 1

Very Likely Science (90)