cran: rvHPDT
Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees
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cran: BiDAG
Bayesian Inference for Directed Acyclic Graphs
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cran: BiDimRegression
Calculates the Bidimensional Regression Between Two 2D Configurations
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cran: profr
An Alternative Display for Profiling Information
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cran: prereg
R Markdown Templates to Preregister Scientific Studies
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cran: prettyR
Pretty Descriptive Stats
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bioconductor: randPack
Randomization routines for Clinical Trials
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pypi: doctor
This module uses python 3 type hints to validate request and response data in Flask Python APIs and generate API documentation.
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cran: embed
Extra Recipes for Encoding Predictors
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pypi: inter
Toolset for interactive command-line applications
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pypi: colour
converts and manipulates various color representation (HSL, RVB, web, X11, ...)
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pypi: document
Wraps dicts in an object for convenient document management
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pypi: genomictools
Tools for processing genomic ranges
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bioconductor: RaggedExperiment
Representation of Sparse Experiments and Assays Across Samples
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bioconductor: R453Plus1Toolbox
A package for importing and analyzing data from Roche's Genome Sequencer System
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bioconductor: RadioGx
Analysis of Large-Scale Radio-Genomic Data
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cran: clustMixType
k-Prototypes Clustering for Mixed Variable-Type Data
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bioconductor: R3CPET
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
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pypi: msaview
A set of Jupyter widgets useful for analyzing biological data.
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cran: dotCall64
Enhanced Foreign Function Interface Supporting Long Vectors
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pypi: cql-builder
CQL generation tool for Apache Cassandra
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cran: DoTC
Distribution of Typicality Coefficients
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cran: spectrolab
Class and Methods for Spectral Data
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pypi: instr
Simple wrapper for various SCPI-compliant instruments
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pypi: scanphyslog2bids
scanphyslog2bids: converts Philips physiology files to the BIDS-format
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cran: bnspatial
Spatial Implementation of Bayesian Networks and Mapping
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pypi: moiety-modeling
Moiety Modeling Implementation
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pypi: infotheory
Information theoretic analysis tools
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pypi: GPGO
Bayesian Optimization with Gaussian Process as surrogate model
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cran: doremi
Dynamics of Return to Equilibrium During Multiple Inputs
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Very Likely Science (75)
pypi: mofa
Mixture of factor analyzers
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cran: donut
Nearest Neighbour Search with Variables on a Torus
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cran: latte
Interface to 'LattE' and '4ti2'
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pypi: gpl
GPL is an unsupervised domain adaptation method for training dense retrievers. It is based on query generation and pseudo labeling with powerful cross-encoders. To train a domain-adapted model, it needs only the unlabeled target corpus and can achieve significant improvement over zero-shot models.
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pypi: geo
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cran: spcr
Sparse Principal Component Regression
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pypi: industry
first dist
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pypi: colorspacious
A powerful, accurate, and easy-to-use Python library for doing colorspace conversions
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pypi: impyute
Cross-sectional and time-series data imputation algorithms
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cran: xbreed
Genomic Simulation of Purebred and Crossbred Populations
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cran: wtest
The W-Test for Genetic Interactions Testing
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cran: DNMF
Discriminant Non-Negative Matrix Factorization
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cran: dineq
Decomposition of (Income) Inequality
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cran: dmutate
Mutate Data Frames with Random Variates
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Very Likely Science (81)
pypi: SCNIC
A tool for finding and summarizing modules of highly correlated observations in compositional data
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pypi: GeoAlchemy
Using SQLAlchemy with Spatial Databases
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cran: rolldown
R Markdown Output Formats for Storytelling
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pypi: modus
A simple modeling python lib
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bioconductor: qcmetrics
A Framework for Quality Control
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pypi: modular
Papers that mentioned: 1
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cran: distr6
The Complete R6 Probability Distributions Interface
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pypi: Sawmill
Alternative logging framework for Python
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cran: distcrete
Discrete Distribution Approximations
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cran: DistatisR
DiSTATIS Three Way Metric Multidimensional Scaling
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cran: dynr
Dynamic Models with Regime-Switching
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pypi: ImageMosaic
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pypi: crt
Cloud Render Toolkit
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bioconductor: proFIA
Preprocessing of FIA-HRMS data
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cran: EcoHydRology
A Community Modeling Foundation for Eco-Hydrology
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bioconductor: proBatch
Tools for Diagnostics and Corrections of Batch Effects in Proteomics
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cran: ecp
Non-Parametric Multiple Change-Point Analysis of Multivariate Data
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pypi: scobra
Supplementary package for COBRApy
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pypi: openx
A simple printer of nested lists
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cran: diseasemapping
Modelling Spatial Variation in Disease Risk for Areal Data
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cran: discSurv
Discrete Time Survival Analysis
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bioconductor: proBAMr
Generating SAM file for PSMs in shotgun proteomics data
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pypi: colorednoise
Generate Gaussian (1/f)**beta noise (e.g. pink noise)
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pypi: crystal
A realtime plotting library built using plot.ly
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bioconductor: proActiv
Estimate Promoter Activity from RNA-Seq data
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cran: Dire
Linear Regressions with a Latent Outcome Variable
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pypi: modest
A modular estimation library
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cran: DIGSS
Determination of Intervals Using Georeferenced Survey Simulation
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cran: RSentiment
Analyse Sentiment of English Sentences
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pypi: eland
Python Client and Toolkit for DataFrames, Big Data, Machine Learning and ETL in Elasticsearch
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pypi: modem
Modem implementations for XMODEM, YMODEM and ZMODEM
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cran: eurostat
Tools for Eurostat Open Data
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cran: spacesXYZ
CIE XYZ and some of Its Derived Color Spaces
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cran: evdbayes
Bayesian Analysis in Extreme Value Theory
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pypi: modelspec
A common JSON/YAML based format for compact model specification
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pypi: cshell
A command line tool to transfer transfer a webshell into a reverse shell, execute command directly into the webshell, genrating payload
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pypi: css
a small, fast css parser for python the utilizes the codetalker library
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cran: blockForest
Block Forests: Random Forests for Blocks of Clinical and Omics Covariate Data
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cran: DiceKriging
Kriging Methods for Computer Experiments
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bioconductor: cola
A Framework for Consensus Partitioning
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cran: DiallelAnalysisR
Diallel Analysis with R
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bioconductor: podkat
Position-Dependent Kernel Association Test
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pypi: ElecSus
(Atomic Physics) Calculate the weak-probe electric susceptibility for alkali-metal vapours
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cran: fdrci
Permutation-Based FDR Point and Confidence Interval Estimation
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cran: dietr
Diet Estimated Trophic Levels
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pypi: colorcet
Collection of perceptually uniform colormaps
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pypi: dnachisel
Optimize DNA sequences under constraints.
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cran: Runuran
R Interface to the 'UNU.RAN' Random Variate Generators
Papers that mentioned: 1
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cran: runstats
Fast Computation of Running Statistics for Time Series
Papers that mentioned: 1
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cran: forams
Foraminifera and Community Ecology Analyses
Papers that mentioned: 1
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bioconductor: plotGrouper
Shiny app GUI wrapper for ggplot with built-in statistical analysis
Papers that mentioned: 1
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pypi: cual-id
A package for creating and managing sample identifiers in comparative -omics datasets.
Papers that mentioned: 1
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pypi: dnaio
Read and write FASTA and FASTQ files efficiently
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pypi: cnorm
CNORM a C Front-end in Python
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cran: furrr
Apply Mapping Functions in Parallel using Futures
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cran: dhga
Differential Hub Gene Analysis
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