Packages with Software Mentions in Scientific Papers

bioconductor: rqt

rqt: utilities for gene-level meta-analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: EloOptimized

Optimized Elo Rating Method for Obtaining Dominance Ranks
Papers that mentioned: 1

Very Likely Science (83)

cran: EFA.MRFA

Dimensionality Assessment Using Minimum Rank Factor Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: EcoNetGen

Simulate and Sample from Ecological Interaction Networks
Papers that mentioned: 1

Very Likely Science (100)

pypi: monica

monica is a command line chef that brings you tasty food
Papers that mentioned: 1

Very Likely Science (65)

cran: ssfa

Spatial Stochastic Frontier Analysis
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: Cepo

Cepo for the identification of differentially stable genes
Papers that mentioned: 1

Very Likely Science (100)

pypi: companion

Companion robot
Papers that mentioned: 1

Very Likely Science (65)

pypi: scenario

SCENe interfAces for Robot Input/Output.
Papers that mentioned: 1

Very Likely Science (80)

pypi: kachery

Please use kachery-cloud instead
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: BANDITS

BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Papers that mentioned: 1

Very Likely Science (100)

pypi: Scavager

Proteomics post-search algorithm
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: BaalChIP

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: attract

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
Papers that mentioned: 1

Very Likely Science (100)

pypi: scattertext

An NLP package to visualize interesting terms in text.
Papers that mentioned: 1

Very Likely Science (81)

cran: ecolottery

Coalescent-Based Simulation of Ecological Communities
Papers that mentioned: 1

Very Likely Science (85)

pypi: moveit

ns_server master events analyzer
Papers that mentioned: 1

Very Likely Science (65)

cran: EBEN

Empirical Bayesian Elastic Net
Papers that mentioned: 1

Very Likely Science (85)

pypi: molyso

MOther machine anaLYsis SOftware
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: biovizBase

Basic graphic utilities for visualization of genomic data.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: biscuiteer

Convenience Functions for Biscuit
Papers that mentioned: 1

Very Likely Science (100)

cran: echarts4r

Create Interactive Graphs with 'Echarts JavaScript' Version 5
Papers that mentioned: 1

Very Likely Science (75)

cran: EBglmnet

Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: monitors

monitor tools
Papers that mentioned: 1

Very Likely Science (80)

cran: easyalluvial

Generate Alluvial Plots with a Single Line of Code
Papers that mentioned: 1

Very Likely Science (75)

pypi: tal

Build Tool
Papers that mentioned: 1

Very Likely Science (65)

cran: spTimer

Spatio-Temporal Bayesian Modelling
Papers that mentioned: 1

Very Likely Science (85)

pypi: iron

iron: the powerful but simple build tool using flows.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: BufferedMatrix

A matrix data storage object held in temporary files
Papers that mentioned: 1

Very Likely Science (100)

cran: DysPIAData

Background and Pathway Data Used in 'DysPIA'
Papers that mentioned: 1

Very Likely Science (85)

cran: bayescount

Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC
Papers that mentioned: 1

Very Likely Science (85)

pypi: scatterbrain

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: BUSpaRse

kallisto | bustools R utilities
Papers that mentioned: 1

Very Likely Science (100)

cran: SPSL

Site Percolation on Square Lattices (SPSL)
Papers that mentioned: 1

Very Likely Science (75)

pypi: ESRNN

Pytorch implementation of the ESRNN
Papers that mentioned: 1

Very Likely Science (83)

pypi: ippai

Image Processing for Photoacoustic Imaging
Papers that mentioned: 1

Very Likely Science (65)

pypi: moltemplate

A general cross-platform text-based molecule builder for LAMMPS
Papers that mentioned: 1

Very Likely Science (100)

pypi: iostream

iostream for Python
Papers that mentioned: 1

Likely Science (40)

cran: dvir

Disaster Victim Identification
Papers that mentioned: 1

Very Likely Science (81)

cran: dupiR

Bayesian inference from count data using discrete uniform priors
Papers that mentioned: 1

Very Likely Science (85)

pypi: precise

The home of Schur Hierarchical Portfolios: an aesthetically pleasing version of Hierarchical Risk Parity
Papers that mentioned: 1

Likely Science (40)

pypi: complexity

A refreshingly simple static site generator, for those who like to work in HTML.
Papers that mentioned: 1

Very Likely Science (65)

pypi: scGeneFit

Genetic marker selection with linear programming
Papers that mentioned: 1

Very Likely Science (91)

cran: POUMM

The Phylogenetic Ornstein-Uhlenbeck Mixed Model
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: RefPlus

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.
Papers that mentioned: 1

Very Likely Science (90)

cran: EbayesThresh

Empirical Bayes Thresholding and Related Methods
Papers that mentioned: 1

Very Likely Science (100)

cran: DSWE

Data Science for Wind Energy
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: recoup

An R package for the creation of complex genomic profile plots
Papers that mentioned: 1

Very Likely Science (100)

cran: dssd

Distance Sampling Survey Design
Papers that mentioned: 1

Very Likely Science (100)

pypi: compneuro

Python Module for Book 4020
Papers that mentioned: 1

Very Likely Science (65)

pypi: morse

Convert strings to morse code.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: celda

CEllular Latent Dirichlet Allocation
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: SAIGEgds

Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association Studies
Papers that mentioned: 1

Very Likely Science (100)

cran: latte

Interface to 'LattE' and '4ti2'
Papers that mentioned: 1

Very Likely Science (81)

pypi: schedular

Schedular is here to schedule jobs by cut off time or jobs that require start+end+interval.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: CellMixS

Evaluate Cellspecific Mixing
Papers that mentioned: 1

Very Likely Science (94)

bioconductor: receptLoss

Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors
Papers that mentioned: 1

Very Likely Science (100)

pypi: combo

A Python Toolbox for Machine Learning Model Combination
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: ARRmNormalization

Adaptive Robust Regression normalization for Illumina methylation data
Papers that mentioned: 1

Very Likely Science (100)

pypi: opentree

Library for interacting with Open Tree of Life resources
Papers that mentioned: 1

Very Likely Science (100)

pypi: kkcalc

A calculator for the Kramers Kronig transform of X-ray spectra
Papers that mentioned: 1

Very Likely Science (80)

cran: SpNMF

Supervised NMF
Papers that mentioned: 1

Very Likely Science (75)

pypi: Moliere

Psycopg wrapper
Papers that mentioned: 1

Very Likely Science (65)

cran: ensembleTax

Ensemble Taxonomic Assignments of Amplicon Sequencing Data
Papers that mentioned: 1

Very Likely Science (85)

cran: enRich

Analysis of Multiple ChIP-Seq Data
Papers that mentioned: 1

Very Likely Science (85)

cran: drtmle

Doubly-Robust Nonparametric Estimation and Inference
Papers that mentioned: 1

Very Likely Science (100)

cran: BayesGOF

Bayesian Modeling via Frequentist Goodness-of-Fit
Papers that mentioned: 1

Very Likely Science (93)

cran: EnsCat

Clustering of Categorical Data
Papers that mentioned: 1

Very Likely Science (97)

pypi: interfaces

Simple decorator implementation of an interface.
Papers that mentioned: 1

Very Likely Science (65)

pypi: combine

A straightforward static site builder.
Papers that mentioned: 1

Likely Science (40)

pypi: kneaddata

Papers that mentioned: 1

Very Likely Science (80)

cran: driveR

Prioritizing Cancer Driver Genes Using Genomics Data
Papers that mentioned: 1

Very Likely Science (100)

cran: EnvCpt

Detection of Structural Changes in Climate and Environment Time Series
Papers that mentioned: 1

Very Likely Science (88)

cran: enveomics.R

Various Utilities for Microbial Genomics and Metagenomics
Papers that mentioned: 1

Very Likely Science (85)

cran: envi

Environmental Interpolation using Spatial Kernel Density Estimation
Papers that mentioned: 1

Very Likely Science (100)

cran: enviGCMS

GC/LC-MS Data Analysis for Environmental Science
Papers that mentioned: 1

Very Likely Science (74)

pypi: scheduler.py

A single module that provides simple date and time based scheduling.
Papers that mentioned: 1

Very Likely Science (65)

cran: ELISAtools

ELISA Data Analysis with Batch Correction
Papers that mentioned: 1

Very Likely Science (93)

pypi: Sawmill

Alternative logging framework for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: montecarlo

A small Python library for creating simple Monte Carlo simulations.
Papers that mentioned: 1

Very Likely Science (75)

pypi: globe

Globe Api
Papers that mentioned: 1

Very Likely Science (100)

pypi: ComPP

Company Passwords Profiler (aka ComPP) helps making a bruteforce wordlist for a targeted company.
Papers that mentioned: 1

Very Likely Science (65)

pypi: kon

A configuration file(s) management library
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: ChIPexoQual

ChIPexoQual
Papers that mentioned: 1

Very Likely Science (100)

pypi: glog

Simple Google-style logging wrapper for Python.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: antiProfiles

Implementation of gene expression anti-profiles
Papers that mentioned: 1

Very Likely Science (100)

pypi: esther

Un simple afficheur d'élements d'une liste
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: Rbowtie

R bowtie wrapper
Papers that mentioned: 1

Very Likely Science (100)

pypi: kubeconfig

A simple wrapper around Kubernetes kubectl
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: ChromSCape

Analysis of single-cell epigenomics datasets with a Shiny App
Papers that mentioned: 1

Very Likely Science (100)

pypi: compressor

compressor
Papers that mentioned: 1

Very Likely Science (65)

pypi: scHiCTools

A user-friendly package for processing single cell HiC data
Papers that mentioned: 1

Very Likely Science (100)

pypi: LADS

Login anomaly detection system
Papers that mentioned: 1

Very Likely Science (65)

cran: blockForest

Block Forests: Random Forests for Blocks of Clinical and Omics Covariate Data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: SCFA

SCFA: Subtyping via Consensus Factor Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: coltron

Package for generating and analyzing transcription networks
Papers that mentioned: 1

Very Likely Science (100)

pypi: moody

A basic CLI to download data from the Mars ODE PDS Node
Papers that mentioned: 1

Very Likely Science (100)

cran: SPEDInstabR

Estimation of the Relative Importance of Factors Affecting Species Distribution Based on Stability Concept
Papers that mentioned: 1

Very Likely Science (75)

cran: rvHPDT

Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees
Papers that mentioned: 1

Very Likely Science (83)

pypi: moor

A commandline tool for managing docker builds
Papers that mentioned: 1

Very Likely Science (65)