Packages with Software Mentions in Scientific Papers

pypi: vireo

A library and framework for event-driven application development
Papers that mentioned: 1

Very Likely Science (65)

pypi: vispy

Interactive visualization in Python
Papers that mentioned: 1

Very Likely Science (90)

cran: gamlss.demo

Demos for GAMLSS
Papers that mentioned: 1

Very Likely Science (83)

cran: gamlss.mx

Fitting Mixture Distributions with GAMLSS
Papers that mentioned: 1

Very Likely Science (83)

cran: gamlss.tr

Generating and Fitting Truncated ‘gamlss.family’ Distributions
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: predictionet

Papers that mentioned: 1

Unlikely Science (0)

pypi: articles

An extremely simple blog engine based on Markdown files
Papers that mentioned: 1

Likely Science (40)

cran: gamRR

Calculate the RR for the GAM
Papers that mentioned: 1

Very Likely Science (75)

pypi: autoconfig

Simple environment, logging, and sys.path setup from a config file
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: ppiStats

Papers that mentioned: 1

Unlikely Science (0)

cran: gammSlice

Generalized Additive Mixed Model Analysis via Slice Sampling
Papers that mentioned: 1

Very Likely Science (93)

cran: isni

Index of Local Sensitivity to Nonignorability
Papers that mentioned: 1

Very Likely Science (83)

pypi: vta

These package provides VirusTotal API module
Papers that mentioned: 1

Very Likely Science (65)

cran: GaSP

Train and Apply a Gaussian Stochastic Process Model
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: PoTRA

Papers that mentioned: 1

Unlikely Science (0)

cran: isodistrreg

Isotonic Distributional Regression (IDR)
Papers that mentioned: 1

Very Likely Science (99)

bioconductor: perturbatr

Papers that mentioned: 1

Unlikely Science (0)

pypi: ampgo

Adaptive Memory Programming for Global Optimization
Papers that mentioned: 1

Very Likely Science (75)

pypi: rama

Papers that mentioned: 1

Very Likely Science (65)

cran: GEEaSPU

Adaptive Association Tests for Multiple Phenotypes using Generalized Estimating Equations (GEE)
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: psichomics

Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
Papers that mentioned: 1

Very Likely Science (100)

pypi: popline

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

pypi: weaver

Wrapper for Fabric
Papers that mentioned: 1

Very Likely Science (65)

cran: geneListPie

Profiling a gene list into GOslim or KEGG function pie
Papers that mentioned: 1

Very Likely Science (75)

cran: music

Learn and Experiment with Music Theory
Papers that mentioned: 1

Very Likely Science (60)

pypi: fishbase

some useful functions for python
Papers that mentioned: 1

Very Likely Science (65)

cran: isqg

In Silico Quantitative Genetics
Papers that mentioned: 1

Very Likely Science (85)

pypi: oim

A library for working with the Open Information Model
Papers that mentioned: 1

Very Likely Science (65)

pypi: rainfall

Micro web framework around asyncio (ex tulip)
Papers that mentioned: 1

Very Likely Science (65)

cran: genomicper

Circular Genomic Permutation using Genome Wide Association p-Values
Papers that mentioned: 1

Very Likely Science (83)

pypi: IsolationForest

An implementation of the Isolation Forest anomaly detection algorithm.
Papers that mentioned: 1

Very Likely Science (75)

cran: GenTag

Generate Color Tag Sequences
Papers that mentioned: 1

Very Likely Science (75)

cran: iva

Instrumental Variable Analysis in Case-Control Association Studies
Papers that mentioned: 1

Very Likely Science (93)

cran: imp4p

Imputation for Proteomics
Papers that mentioned: 1

Very Likely Science (85)

cran: geotoolsR

Tools to Improve the Use of Geostatistic
Papers that mentioned: 1

Very Likely Science (75)

cran: hues

Distinct Colour Palettes Based on 'iwanthue'
Papers that mentioned: 1

Likely Science (52)

pypi: ase

Atomic Simulation Environment
Papers that mentioned: 1

Very Likely Science (90)

cran: GFE

Gross Flows Estimation under Complex Surveys
Papers that mentioned: 1

Very Likely Science (83)

cran: bpbounds

Nonparametric Bounds for the Average Causal Effect Due to Balke and Pearl and Extensions
Papers that mentioned: 1

Very Likely Science (100)

pypi: xpa

X-ray diffraction lib for analysis
Papers that mentioned: 1

Very Likely Science (75)

cran: mut

Pairwise Likelihood Ratios
Papers that mentioned: 1

Likely Science (50)

pypi: asg

A tool to automatically generate schematics from SPICE netlists
Papers that mentioned: 1

Very Likely Science (65)

pypi: numconv

Python library to convert strings to numbers and numbers to strings.
Papers that mentioned: 1

Very Likely Science (65)

cran: gwsem

Papers that mentioned: 1

Unlikely Science (0)

pypi: mcgen

Python utilities for downloading and processing Minecraft's generated data.
Papers that mentioned: 1

Very Likely Science (65)

pypi: synchro

Customisable file transfers using rsync
Papers that mentioned: 1

Very Likely Science (85)

pypi: EmoPy

A deep neural net toolkit for emotion analysis via Facial Expression Recognition (FER)
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: genphen

Papers that mentioned: 1

Unlikely Science (0)

cran: meteR

Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)
Papers that mentioned: 1

Very Likely Science (97)

bioconductor: ideal

Interactive Differential Expression AnaLysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: mcheck

A python package that can be installed with pip.
Papers that mentioned: 1

Very Likely Science (65)

pypi: dyconnmap

A dynamic connectome mapping module in Python
Papers that mentioned: 1

Very Likely Science (100)

cran: KnowGRRF

Papers that mentioned: 1

Unlikely Science (0)

cran: sociome

Operationalizing Social Determinants of Health Data for Researchers
Papers that mentioned: 1

Very Likely Science (100)

cran: Knoema

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: dyebias

The GASSCO method for correcting for slide-dependent gene-specific dye bias
Papers that mentioned: 1

Very Likely Science (90)

pypi: Zp

Field Zp module
Papers that mentioned: 1

Very Likely Science (65)

cran: mixsep

Forensic Genetics DNA Mixture Separation
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: gpart

Papers that mentioned: 1

Unlikely Science (0)

pypi: aspect

Lightweight Aspect-oriented Module for Python
Papers that mentioned: 1

Very Likely Science (65)

cran: GPIC

Quantifying Group Performance in Individual Competitions
Papers that mentioned: 1

Very Likely Science (75)

pypi: offspring

Objects and patterns for working with processes in Python using the multiprocessing library
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: epigenomix

Epigenetic and gene transcription data normalization and integration with mixture models
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: epivizrChart

R interface to epiviz web components
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: multiGSEA

Combining GSEA-based pathway enrichment with multi omics data integration
Papers that mentioned: 1

Very Likely Science (100)

pypi: asq

LINQ-for-objects style queries for Python iterables.
Papers that mentioned: 1

Very Likely Science (65)

pypi: readtagger

Tags reads in a BAM file based on other BAM files.
Papers that mentioned: 1

Very Likely Science (100)

cran: mixIndependR

Genetics and Independence Testing of Mixed Genetic Panels
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: gaia

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: fastseg

fastseg - a fast segmentation algorithm
Papers that mentioned: 1

Very Likely Science (85)

pypi: terroir

terraform templating wrapper
Papers that mentioned: 1

Very Likely Science (65)

cran: MetaDBparse

Annotate Mass over Charge Values with Databases and Formula Prediction
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: Onassis

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: diffloop

Papers that mentioned: 1

Unlikely Science (0)

pypi: nidmfsl

Export of FSL statistical results using NIDM as specified at http://nidm.nidash.org/specs/nidm-results.html.
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: dualKS

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: MSGFgui

Papers that mentioned: 1

Unlikely Science (0)

cran: nardl

Nonlinear Cointegrating Autoregressive Distributed Lag Model
Papers that mentioned: 1

Very Likely Science (95)

bioconductor: mia

Microbiome analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: ghyp

Generalized Hyperbolic Distribution and Its Special Cases
Papers that mentioned: 1

Very Likely Science (75)

cran: auk

eBird Data Extraction and Processing in R
Papers that mentioned: 1

Very Likely Science (100)

cran: metro

Washington Metropolitan Area Transit Authority API
Papers that mentioned: 1

Very Likely Science (81)

pypi: endocal

A cross-platform, compact GUI application for the optical distortion calibration of fluid-immersed endoscopes.
Papers that mentioned: 1

Very Likely Science (100)

cran: MIXFIM

Evaluation of the FIM in NLMEMs using MCMC
Papers that mentioned: 1

Very Likely Science (75)

cran: mixdir

Cluster High Dimensional Categorical Datasets
Papers that mentioned: 1

Very Likely Science (85)

cran: GetoptLong

Parsing Command-Line Arguments and Simple Variable Interpolation
Papers that mentioned: 1

Likely Science (50)

cran: geofacet

'ggplot2' Faceting Utilities for Geographical Data
Papers that mentioned: 1

Very Likely Science (75)

cran: Gini

Gini Coefficient
Papers that mentioned: 1

Very Likely Science (75)

pypi: hq

Command-line tool for querying, slicing & dicing HTML using the XPath/XQuery derivative HQuery.
Papers that mentioned: 1

Very Likely Science (65)

pypi: twill

twill web browsing and testing language and associated utilities.
Papers that mentioned: 1

Very Likely Science (85)

pypi: Varia

Simple GUI elements
Papers that mentioned: 1

Very Likely Science (65)

pypi: twilight

Twitter (crawling) tools.
Papers that mentioned: 1

Likely Science (40)

pypi: tfest

Transfer function estimation based on frequency response.
Papers that mentioned: 1

Very Likely Science (65)

pypi: xtick

Visualization for intraday data
Papers that mentioned: 1

Very Likely Science (65)

pypi: turbo

turbo is a web framework for fast web development based in tornado, mongodb, redis
Papers that mentioned: 1

Very Likely Science (65)

pypi: vartrix

Easily manange and automate variables and parameters.
Papers that mentioned: 1

Very Likely Science (65)

pypi: vega

A Jupyter widget for Vega 5 and Vega-Lite 4
Papers that mentioned: 1

Very Likely Science (95)

pypi: vbox

VirtualBox CLI bindings
Papers that mentioned: 1

Very Likely Science (85)

pypi: vbind

sRNA profiler
Papers that mentioned: 1

Very Likely Science (80)

pypi: vcam

Papers that mentioned: 1

Very Likely Science (65)