Packages with Software Mentions in Scientific Papers

bioconductor: MethTargetedNGS

Perform Methylation Analysis on Next Generation Sequencing Data
Papers that mentioned: 1

Very Likely Science (100)

A software package for the integration of metrological input into an agent-based system for the consideration of measurement uncertainty in current industrial manufacturing processes.
Papers that mentioned: 1

Very Likely Science (100)

pypi: fread

A python package to change from Interaction console based code to file based code
Papers that mentioned: 1

Very Likely Science (65)

cran: MetGen

Stochastic Weather Generator
Papers that mentioned: 1

Very Likely Science (75)

cran: IsoCorr

Correcting Drift and Carry-over in Continuous Isotopic Measurements
Papers that mentioned: 1

Very Likely Science (75)

pypi: bump

Bumps package version numbers
Papers that mentioned: 1

Very Likely Science (65)

pypi: burnman

A thermoelastic and thermodynamic toolkit for the Earth and planetary sciences
Papers that mentioned: 1

Very Likely Science (100)

pypi: fluopi

Module to manage and analyze time-lapse data obtained with fluopi equipment
Papers that mentioned: 1

Very Likely Science (100)

cran: MethodCompare

Bias and Precision Plots
Papers that mentioned: 1

Very Likely Science (75)

pypi: markers

A data labeling widget for use with Markers.ai
Papers that mentioned: 1

Very Likely Science (80)

cran: Copula.surv

Analysis of Bivariate Survival Data Based on Copulas
Papers that mentioned: 1

Very Likely Science (85)

pypi: gemmi

library for structural biology
Papers that mentioned: 1

Very Likely Science (90)

pypi: transmap

API for Transmap Hub
Papers that mentioned: 1

Very Likely Science (65)

pypi: frog

Improved and extended turtle graphics like module
Papers that mentioned: 1

Very Likely Science (90)

cran: RJDBC

Provides Access to Databases Through the JDBC Interface
Papers that mentioned: 1

Likely Science (50)

cran: conting

Bayesian Analysis of Contingency Tables
Papers that mentioned: 1

Very Likely Science (85)

pypi: EvoDAG

Evolving Directed Acyclic Graph
Papers that mentioned: 1

Very Likely Science (100)

pypi: Millet

A simple framework for building complex dialogue systems.
Papers that mentioned: 1

Very Likely Science (65)

pypi: kontroller

Python lib for kubernetes controllers
Papers that mentioned: 1

Very Likely Science (65)

pypi: automlsa2

Automated Multi-Locus Sequence Analysis tool
Papers that mentioned: 1

Very Likely Science (100)

pypi: reconcile

A reconciliation loop system.
Papers that mentioned: 1

Very Likely Science (65)

pypi: squire

Watch a directory and run a command on changes
Papers that mentioned: 1

Very Likely Science (65)

cran: irrNA

Coefficients of Interrater Reliability – Generalized for Randomly Incomplete Datasets
Papers that mentioned: 1

Very Likely Science (75)

cran: TEQR

Target Equivalence Range Design
Papers that mentioned: 1

Very Likely Science (75)

cran: SemNeT

Methods and Measures for Semantic Network Analysis
Papers that mentioned: 1

Very Likely Science (95)

cran: Ternary

Create Ternary and Holdridge Plots
Papers that mentioned: 1

Very Likely Science (100)

pypi: evolving

trading api
Papers that mentioned: 1

Very Likely Science (65)

pypi: RNFtools

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
Papers that mentioned: 1

Very Likely Science (100)

pypi: MiniML

MiniML - a minimal machine learning API based on Apache MADlib and PostgreSQL
Papers that mentioned: 1

Very Likely Science (90)

cran: textreuse

Detect Text Reuse and Document Similarity
Papers that mentioned: 1

Very Likely Science (95)

pypi: motmot.fview_ext_trig

Camera trigger device with precise timing and analog input
Papers that mentioned: 1

Very Likely Science (65)

cran: nevada

Network-Valued Data Analysis
Papers that mentioned: 1

Very Likely Science (93)

cran: contact

Creating Contact and Social Networks
Papers that mentioned: 1

Very Likely Science (100)

cran: ConSpline

Partial Linear Least-Squares Regression using Constrained Splines
Papers that mentioned: 1

Very Likely Science (93)

cran: PROTOLIDAR

Papers that mentioned: 1

Unlikely Science (0)

pypi: jpeglib

Python envelope for the popular C librarylibjpeg for handling JPEG files.
Papers that mentioned: 1

Very Likely Science (100)

cran: opdisDownsampling

Optimal Distribution Preserving Down-Sampling of Bio-Medical Data
Papers that mentioned: 1

Very Likely Science (93)

pypi: blind

Blind Client: The easiest ML tracking library
Papers that mentioned: 1

Likely Science (40)

pypi: blob

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

cran: vdiffr

Visual Regression Testing and Graphical Diffing
Papers that mentioned: 1

Very Likely Science (100)

pypi: aga

aga grades assignments
Papers that mentioned: 1

Very Likely Science (65)

cran: mdthemes

Markdown Themes for 'ggplot2'
Papers that mentioned: 1

Very Likely Science (75)

cran: COMPoissonReg

Conway-Maxwell Poisson (COM-Poisson) Regression
Papers that mentioned: 1

Very Likely Science (100)

pypi: Bookmark

Web bookmark manager
Papers that mentioned: 1

Very Likely Science (65)

cran: complexity

Calculate the Proportion of Permutations in Line with an Informative Hypothesis
Papers that mentioned: 1

Very Likely Science (75)

pypi: bycycle

Cycle-by-cycle analyses of neural oscillations.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: MCbiclust

Massive correlating biclusters for gene expression data and associated methods
Papers that mentioned: 1

Very Likely Science (100)

pypi: kodak

HTTP server for uploading images and generating thumbnails
Papers that mentioned: 1

Very Likely Science (80)

pypi: autolab

Python package for scientific experiments interfacing and automation
Papers that mentioned: 1

Very Likely Science (90)

cran: colorfulVennPlot

Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data
Papers that mentioned: 1

Very Likely Science (75)

pypi: aflow

Python API for searching AFLOW database.
Papers that mentioned: 1

Very Likely Science (84)

pypi: optima

PyTorch Optimization Framework for Researchers
Papers that mentioned: 1

Very Likely Science (75)

cran: triplot

Explaining Correlated Features in Machine Learning Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: correlate

Correlates two sets of data by matching
Papers that mentioned: 1

Very Likely Science (65)

cran: CoClust

Copula Based Cluster Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: cmaes

Covariance Matrix Adapting Evolutionary Strategy
Papers that mentioned: 1

Very Likely Science (85)

cran: chronosphere

Evolving Earth System Variables
Papers that mentioned: 1

Very Likely Science (64)

pypi: instruct

Compact/flexible/fast/strictly-typed/(add other ridiculous demands) object system - similar to Pydantic but focused on `__slot__`ed objects
Papers that mentioned: 1

Very Likely Science (85)

cran: MAnorm2

Tools for Normalizing and Comparing ChIP-seq Samples
Papers that mentioned: 1

Very Likely Science (100)

pypi: mirror

Mirror for open source mirror site to sync files
Papers that mentioned: 1

Very Likely Science (65)

pypi: traffic

A toolbox for manipulating and analysing air traffic data
Papers that mentioned: 1

Very Likely Science (100)

cran: osqp

Quadratic Programming Solver using the 'OSQP' Library
Papers that mentioned: 1

Very Likely Science (83)

cran: choiceDes

Design Functions for Choice Studies
Papers that mentioned: 1

Very Likely Science (75)

cran: childesr

Accessing the 'CHILDES' Database
Papers that mentioned: 1

Very Likely Science (100)

pypi: fuchsia

Fuchsia reduces differential equations for Feynman master integrals to canonical form
Papers that mentioned: 1

Very Likely Science (90)

pypi: TranscriptSim

Package for Coaching Session Transcripts Similarity Calculations
Papers that mentioned: 1

Very Likely Science (65)

cran: paleoMAS

Paleoecological Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: networktree

Recursive Partitioning of Network Models
Papers that mentioned: 1

Very Likely Science (100)

pypi: icosphere

Constructs geodesic icosahedron given subdivision frequency.
Papers that mentioned: 1

Very Likely Science (81)

pypi: caddie

Information-Theoretic Causal Inference on Discrete Data
Papers that mentioned: 1

Very Likely Science (80)

pypi: aloha

Aloha - a versatile Python utility package for building services
Papers that mentioned: 1

Very Likely Science (70)

pypi: jacket

Papers that mentioned: 1

Very Likely Science (65)

pypi: aes

A simple tool for AES(Advanced Encryption Standard)
Papers that mentioned: 1

Very Likely Science (65)

cran: IPDfromKM

Map Digitized Survival Curves Back to Individual Patient Data
Papers that mentioned: 1

Very Likely Science (75)

cran: RSocrata

Download or Upload 'Socrata' Data Sets
Papers that mentioned: 1

Very Likely Science (65)

pypi: kafka-python

Pure Python client for Apache Kafka
Papers that mentioned: 1

Very Likely Science (85)

cran: cheddar

Analysis and Visualisation of Ecological Communities
Papers that mentioned: 1

Very Likely Science (100)

pypi: gems

Python utilities for data manipulation and management.
Papers that mentioned: 1

Very Likely Science (65)

pypi: FLiP

F L i P : Logical Framework in Python
Papers that mentioned: 1

Very Likely Science (80)

pypi: metapy

Python bindings for MeTA
Papers that mentioned: 1

Very Likely Science (100)

pypi: jsonschema

An implementation of JSON Schema validation for Python
Papers that mentioned: 1

Very Likely Science (100)

pypi: misas

Model Interpretation through Sensitivity Analysis for Segmentation
Papers that mentioned: 1

Very Likely Science (100)

pypi: jscatter

Combines dataArrays with attributes for fitting plotting and analysis including models for Xray and neutron scattering
Papers that mentioned: 1

Very Likely Science (90)

cran: PedCNV

An implementation for association analysis with CNV data
Papers that mentioned: 1

Very Likely Science (85)

pypi: robo-gym

robo-gym: an open source toolkit for Distributed Deep Reinforcement Learning on real and simulated robots.
Papers that mentioned: 1

Very Likely Science (100)

cran: intRvals

Analysis of Time-Ordered Event Data with Missed Observations
Papers that mentioned: 1

Very Likely Science (93)

pypi: funniest

The funniest joke in the world
Papers that mentioned: 1

Very Likely Science (65)

pypi: Flintrock

A command-line tool for launching Apache Spark clusters.
Papers that mentioned: 1

Very Likely Science (80)

cran: perfectphyloR

Reconstruct Perfect Phylogenies from DNA Sequence Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: id

A tool for generating OIDC identities
Papers that mentioned: 1

Very Likely Science (65)

pypi: autofeat

Automatic Feature Engineering and Selection Linear Prediction Model
Papers that mentioned: 1

Very Likely Science (65)

pypi: banjo

Not a placeholder for an internal library
Papers that mentioned: 1

Very Likely Science (65)

cran: lsplsGlm

Classification using LS-PLS for Logistic Regression
Papers that mentioned: 1

Very Likely Science (85)

pypi: robotics

package for robot kinematics analysis
Papers that mentioned: 1

Very Likely Science (75)

pypi: JSNMF

Papers that mentioned: 1

Unlikely Science (0)

pypi: aequitas

The bias and fairness audit toolkit.
Papers that mentioned: 1

Very Likely Science (100)

pypi: mypy

Optional static typing for Python
Papers that mentioned: 1

Very Likely Science (100)

pypi: autocorrect

Spelling Corrector
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: xmapbridge

Export plotting files to the xmapBridge for visualisation in X:Map
Papers that mentioned: 1

Very Likely Science (100)

cran: CDFt

Downscaling and Bias Correction via Non-Parametric CDF-Transform
Papers that mentioned: 1

Very Likely Science (75)