Packages with Software Mentions in Scientific Papers

Interface to UCSC genomic databases. Also allows things like up/downstream/k-nearest-neighbor queries and mirroring of tables to local sqlite databases
Papers that mentioned: 1

Very Likely Science (100)

pypi: gpseer

Python API to infer missing data in sparsely sampled genotype-phenotype maps.
Papers that mentioned: 1

Very Likely Science (100)

Model and View support for bottle framework, currently supports MongoDB. The ViewModel provides a high level DB schema and interface to a database as well as an interface from the DB to views. Current version works with bottle framework and pymongo however a previous version supported SQLAlchemy and other frameworks could be supported.
Papers that mentioned: 1

Very Likely Science (65)

pypi: tigreBrowser

Gene expression model browser for results from tigre R package (http://www.bioconductor.org/packages/release/bioc/html/tigre.html)
Papers that mentioned: 1

Very Likely Science (100)

pypi: til

Keep track of things you learn each day
Papers that mentioned: 1

Very Likely Science (65)

cran: EffectLiteR

Average and Conditional Effects
Papers that mentioned: 1

Very Likely Science (79)

pypi: crs

Geographic Coordinate Reference System Encapsulation and Conversion
Papers that mentioned: 1

Very Likely Science (65)

pypi: timedata

High-performance arithmetic for RGB color and for time data in general.
Papers that mentioned: 1

Very Likely Science (65)

pypi: timeseries

Time series modelling and analysis
Papers that mentioned: 1

Very Likely Science (75)

cran: ecd

Elliptic Lambda Distribution and Option Pricing Model
Papers that mentioned: 1

Very Likely Science (75)

pypi: tinc

TINC python module
Papers that mentioned: 1

Very Likely Science (100)

pypi: tinfo

Console extension to tmux
Papers that mentioned: 1

Very Likely Science (65)

pypi: tion

Tion Magic Air API
Papers that mentioned: 1

Very Likely Science (65)

pypi: tips

A tips per day tracker and displayer
Papers that mentioned: 1

Very Likely Science (65)

pypi: domaincaller

A python implementation of original DI-based domain caller proposed by Dixon et al. (2012)
Papers that mentioned: 1

Very Likely Science (100)

pypi: donut

Makes symlinks to dotfiles.
Papers that mentioned: 1

Very Likely Science (75)

pypi: tlx

Frequently used utilities and code.
Papers that mentioned: 1

Very Likely Science (65)

pypi: hnget

Shows and opens links on Hacker news from the terminal
Papers that mentioned: 1

Very Likely Science (65)

pypi: Hockey

Hockey Stats
Papers that mentioned: 1

Very Likely Science (65)

pypi: msea

Implementation of Microbe-Set Enrichment Analysis (MSEA).
Papers that mentioned: 1

Very Likely Science (75)

pypi: tiv

Terminal Image Viewer
Papers that mentioned: 1

Very Likely Science (65)

pypi: mykrobe

.
Papers that mentioned: 1

Very Likely Science (100)

pypi: doppel

A friendly file copier/installer
Papers that mentioned: 1

Very Likely Science (65)

pypi: TKT

This project aims to provide multiple knowledge tracing models.
Papers that mentioned: 1

Very Likely Science (65)

pypi: healthcareai

Tools for healthcare machine learning
Papers that mentioned: 1

Very Likely Science (90)

pypi: hd

Hexdump library and utility.
Papers that mentioned: 1

Likely Science (40)

pypi: venture

Rofi / Wofi based project selector
Papers that mentioned: 1

Very Likely Science (65)

pypi: emvis

Visualization tools for EM data analysis
Papers that mentioned: 1

Very Likely Science (75)

cran: SCVA

Single-Case Visual Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: domain

Python client for the Domain property API
Papers that mentioned: 1

Very Likely Science (65)

pypi: group-lasso

Fast group lasso regularised linear models in a sklearn-style API.
Papers that mentioned: 1

Very Likely Science (75)

pypi: document

Wraps dicts in an object for convenient document management
Papers that mentioned: 1

Very Likely Science (65)

pypi: Gnosis

Parses XML into Python object representation
Papers that mentioned: 1

Very Likely Science (65)

cran: selfea

Select Features Reliably with Cohen's Effect Sizes
Papers that mentioned: 1

Very Likely Science (75)

pypi: docrep

Python package for docstring repetition
Papers that mentioned: 1

Very Likely Science (65)

cran: SemiCompRisks

Hierarchical Models for Parametric and Semi-Parametric Analyses of Semi-Competing Risks Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: dos2unix

convert dos linefeeds (crlf) to unix (lf)
Papers that mentioned: 1

Very Likely Science (65)

pypi: haversine

Calculate the distance between 2 points on Earth.
Papers that mentioned: 1

Very Likely Science (100)

pypi: gpflow

Gaussian process methods in TensorFlow
Papers that mentioned: 1

Very Likely Science (80)

pypi: gpath

An abstraction of basic path operations between IronPython and CPython libraries. Does not use python standard libraries with IronPython.
Papers that mentioned: 1

Very Likely Science (65)

cran: simFrame

Simulation Framework
Papers that mentioned: 1

Very Likely Science (85)

pypi: dockit

Fuzzy the current location to pull all the submodules and specify the project if required. To launch, close and execute container with docker-compose and its relative services without change the directory.
Papers that mentioned: 1

Likely Science (40)