Packages with Software Mentions in Scientific Papers

Register `cividis` with matplotlib, a color map optimized for color vision deficiency, as published in Nuñez, et al. (2018), PLoS ONE 13(7): e0199239 .
Papers that mentioned: 1

Very Likely Science (65)

pypi: R3C

R3C: The Blockchain of confidential data & things.
Papers that mentioned: 1

Likely Science (55)

pypi: checkQC

A simple program to parse Illumina NGS data and check it for quality criteria.
Papers that mentioned: 1

Very Likely Science (100)

pypi: band

BERT Application
Papers that mentioned: 1

Very Likely Science (65)

pypi: rasch

Papers that mentioned: 1

Very Likely Science (65)

pypi: Rune

Rune Framework
Papers that mentioned: 1

Very Likely Science (65)

pypi: webbench

lightweight HTTP/HTTPS benchmark tool written on Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: frags

Finding recombinations in reads
Papers that mentioned: 1

Very Likely Science (80)

pypi: Lectio

A Lectio API, used for accessing lectio.dk
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: tkWidgets

R based tk widgets
Papers that mentioned: 1

Very Likely Science (83)

cran: desiR

Desirability Functions for Ranking, Selecting, and Integrating Data
Papers that mentioned: 1

Very Likely Science (100)

cran: relaxo

Relaxed Lasso
Papers that mentioned: 1

Very Likely Science (75)

cran: phenex

Auxiliary Functions for Phenological Data Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: relimp

Relative Contribution of Effects in a Regression Model
Papers that mentioned: 1

Very Likely Science (93)

cran: relMix

Relationship Inference for DNA Mixtures
Papers that mentioned: 1

Very Likely Science (75)

cran: ReorderCluster

Reordering the Dendrogram According to the Class Labels
Papers that mentioned: 1

Very Likely Science (75)

pypi: pipe

Module enablig a sh like infix syntax (using pipes)
Papers that mentioned: 1

Very Likely Science (65)

pypi: records

SQL for Humans
Papers that mentioned: 1

Very Likely Science (65)

pypi: bcbio-gff

Read and write Generic Feature Format (GFF) with Biopython integration.
Papers that mentioned: 1

Very Likely Science (100)

pypi: readable

testing and assertion library
Papers that mentioned: 1

Very Likely Science (65)

cran: mlegp

Maximum Likelihood Estimates of Gaussian Processes
Papers that mentioned: 1

Very Likely Science (83)

cran: MLEcens

Computation of the MLE for Bivariate Interval Censored Data
Papers that mentioned: 1

Very Likely Science (75)

cran: MLCM

Maximum Likelihood Conjoint Measurement
Papers that mentioned: 1

Very Likely Science (75)

pypi: fnc

Functional programming in Python with generators and other utilities.
Papers that mentioned: 1

Likely Science (40)

cran: DeducerPlugInScaling

Reliability and factor analysis plugin
Papers that mentioned: 1

Very Likely Science (60)

pypi: registration

A set of TurboGears templates to provide user registration functions.
Papers that mentioned: 1

Very Likely Science (65)

pypi: registry

Windows registry API
Papers that mentioned: 1

Very Likely Science (65)

cran: MixAll

Clustering and Classification using Model-Based Mixture Models
Papers that mentioned: 1

Very Likely Science (75)

pypi: Watchmen

Comparing Image for Tesena
Papers that mentioned: 1

Very Likely Science (65)

pypi: chemdescriptor

A standalone module to help generate molecular descriptors from various cheminformatics software
Papers that mentioned: 1

Very Likely Science (100)

cran: rprojroot

Finding Files in Project Subdirectories
Papers that mentioned: 1

Very Likely Science (81)

pypi: stitcher

Join Messenger conversation screenshots.
Papers that mentioned: 1

Very Likely Science (65)

pypi: strainer

Tools to allow developers to cleanup web serialization objects (HTML, JSON, XHTML)
Papers that mentioned: 1

Very Likely Science (65)

pypi: zoltpy

A package of Reich Lab Zoltar utility functions.
Papers that mentioned: 1

Very Likely Science (75)

pypi: chemhelper

Package for solving chemistry problems and also showing step by step solutions.
Papers that mentioned: 1

Very Likely Science (95)

pypi: echarts

A echarts Python project
Papers that mentioned: 1

Very Likely Science (65)

pypi: orb

pip/virtualenv shell script wrapper
Papers that mentioned: 1

Very Likely Science (65)

pypi: rhythm

Papers that mentioned: 1

Unlikely Science (0)

pypi: rohan

Your project description here
Papers that mentioned: 1

Very Likely Science (65)

cran: mixedCCA

Sparse Canonical Correlation Analysis for High-Dimensional Mixed Data
Papers that mentioned: 1

Very Likely Science (93)

pypi: ext

Monkey patching support for built-in types in CPython (3.x)
Papers that mentioned: 1

Very Likely Science (65)

pypi: baidumap

api handle for baidu map
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: maPredictDSC

Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge
Papers that mentioned: 1

Very Likely Science (100)

pypi: ballet

Core functionality for lightweight, collaborative data science projects
Papers that mentioned: 1

Very Likely Science (100)

pypi: kodak

HTTP server for uploading images and generating thumbnails
Papers that mentioned: 1

Very Likely Science (80)

cran: dataMaid

A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process
Papers that mentioned: 1

Very Likely Science (100)

cran: r4ss

R Code for Stock Synthesis
Papers that mentioned: 1

Very Likely Science (100)

pypi: f2c

Configuration utility for CyGlass Fortigate Integration
Papers that mentioned: 1

Likely Science (55)

pypi: autocorrect

Spelling Corrector
Papers that mentioned: 1

Very Likely Science (65)

pypi: roget

Papers that mentioned: 1

Unlikely Science (0)

pypi: WeChatPay

Python-Django WeChat payment API.
Papers that mentioned: 1

Unlikely Science (15)

pypi: zeroconf

A pure python implementation of multicast DNS service discovery
Papers that mentioned: 1

Very Likely Science (65)

cran: R2wd

Write MS-Word documents from R
Papers that mentioned: 1

Very Likely Science (75)

cran: Rage

Life History Metrics from Matrix Population Models
Papers that mentioned: 1

Very Likely Science (100)

pypi: ggtools

A package to handle the GRACE and GRACE-FO GSM data and GLDAS grid data
Papers that mentioned: 1

Very Likely Science (100)

pypi: s2s

Sequence to Sequence Learning with PyTorch
Papers that mentioned: 1

Very Likely Science (80)

pypi: Statis

Modular system monitoring and status display via desktop notifications.
Papers that mentioned: 1

Very Likely Science (65)

pypi: Rtree

R-Tree spatial index for Python GIS
Papers that mentioned: 1

Very Likely Science (100)

pypi: CladeCompare

Test for sites of contrasting conservation between gene clades.
Papers that mentioned: 1

Very Likely Science (100)

pypi: chicken

The Chicken came in the egg
Papers that mentioned: 1

Very Likely Science (65)

pypi: eyes

Eyes is a project to enable quick, simple, and API enabled monitoring and data collection
Papers that mentioned: 1

Very Likely Science (65)

pypi: boolsim

Python interface to boolSim
Papers that mentioned: 1

Very Likely Science (95)

cran: lqr

Robust Linear Quantile Regression
Papers that mentioned: 1

Very Likely Science (85)

cran: shadowtext

Shadow Text Grob and Layer
Papers that mentioned: 1

Very Likely Science (95)

bioconductor: timescape

Patient Clonal Timescapes
Papers that mentioned: 1

Very Likely Science (90)

pypi: meow

meow is an editor-agnostic markdown/reST live preview server.
Papers that mentioned: 1

Very Likely Science (65)

pypi: resting

Pretty convenient REST API client
Papers that mentioned: 1

Very Likely Science (65)

cran: rbison

Interface to the 'USGS' 'BISON' API
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: sincell

R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data
Papers that mentioned: 1

Very Likely Science (100)

cran: truncdist

Truncated Random Variables
Papers that mentioned: 1

Very Likely Science (83)

pypi: swat

SAS Scripting Wrapper for Analytics Transfer (SWAT)
Papers that mentioned: 1

Very Likely Science (70)

cran: DACF

Data Analysis with Ceiling and/or Floor Data
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: weaver

Tools and extensions for processing Sweave documents
Papers that mentioned: 1

Very Likely Science (75)

pypi: paragon

A tiny command line benchmarking utility
Papers that mentioned: 1

Likely Science (40)

pypi: fso

File System Overlay - filesystem layering for unit testing
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: scTHI

Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data
Papers that mentioned: 1

Very Likely Science (100)

pypi: bosh

BigObject service command line tool
Papers that mentioned: 1

Likely Science (40)

cran: LUCIDus

LUCID with Multiple Omics Data
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: scTensor

Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
Papers that mentioned: 1

Very Likely Science (90)

pypi: ment

python library to write daily log in markdown quickly and to synthesize daily logs based on category
Papers that mentioned: 1

Very Likely Science (65)

pypi: resourcer

A simple wrapper around 'requests'
Papers that mentioned: 1

Very Likely Science (65)

pypi: revamp

Data pre-processing
Papers that mentioned: 1

Very Likely Science (65)

pypi: resident

Address processing
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: REDseq

Analysis of high-throughput sequencing data processed by restriction enzyme digestion
Papers that mentioned: 1

Very Likely Science (83)

pypi: pdftables

Parses PDFs and extracts what it believes to be tables.
Papers that mentioned: 1

Very Likely Science (65)

pypi: edd-utils

Download Studies from an Experiment Data Depot Instance
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: methimpute

Imputation-guided re-construction of complete methylomes from WGBS data
Papers that mentioned: 1

Very Likely Science (90)

pypi: gid

Gid is a small library for generating short globally unique, sortable uri safe identifiers.
Papers that mentioned: 1

Very Likely Science (65)