Packages with Software Mentions in Scientific Papers

Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Papers that mentioned: 1

Very Likely Science (80)

pypi: whippet

Install make based git hooks with ease.
Papers that mentioned: 1

Very Likely Science (65)

pypi: scallop

Robustness of single-cell clustering solutions.
Papers that mentioned: 1

Very Likely Science (96)

pypi: richdem

High-Performance Terrain Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: qGaussian

The q-Gaussian Distribution
Papers that mentioned: 1

Very Likely Science (75)

pypi: gif

The matplotlib Animation Extension
Papers that mentioned: 1

Very Likely Science (100)

pypi: gimmemotifs

GimmeMotifs is a motif prediction pipeline.
Papers that mentioned: 1

Very Likely Science (100)

pypi: sc2reader

Utility for parsing Starcraft II replay files
Papers that mentioned: 1

Possibly Science (25)

pypi: metabase

python wrapper for metabase api
Papers that mentioned: 1

Very Likely Science (65)

pypi: chowtest

Python implementation of the Chow test (1960).
Papers that mentioned: 1

Very Likely Science (65)

pypi: dune

Papers that mentioned: 1

Unlikely Science (0)

pypi: MetaArray

N-dimensional array with metadata such as axis titles, units, and column names.
Papers that mentioned: 1

Very Likely Science (80)

pypi: schrodinger

Tools to improve visibility into the running state of your code
Papers that mentioned: 1

Likely Science (40)

cran: uroot

Unit Root Tests for Seasonal Time Series
Papers that mentioned: 1

Very Likely Science (100)

pypi: chromato

🍅 Fresh color utilities.
Papers that mentioned: 1

Likely Science (40)

bioconductor: MWASTools

MWASTools: an integrated pipeline to perform metabolome-wide association studies
Papers that mentioned: 1

Very Likely Science (98)

pypi: dominant

A small package for dominant sets
Papers that mentioned: 1

Very Likely Science (65)

cran: rClinicalCodes

R tools for integrating with the www.clinicalcodes.org repository
Papers that mentioned: 1

Very Likely Science (85)

cran: rCMA

R-to-Java Interface for 'CMA-ES'
Papers that mentioned: 1

Very Likely Science (75)

cran: paramlink

Parametric Linkage and Other Pedigree Analysis in R
Papers that mentioned: 1

Very Likely Science (85)

pypi: scikit-cuda

Python interface to GPU-powered libraries
Papers that mentioned: 1

Very Likely Science (100)

pypi: seqfu

Papers that mentioned: 1

Unlikely Science (0)

pypi: WPServer

a web mapping transformation library
Papers that mentioned: 1

Very Likely Science (80)

cran: easyalluvial

Generate Alluvial Plots with a Single Line of Code
Papers that mentioned: 1

Very Likely Science (75)

cran: rrcovHD

Robust Multivariate Methods for High Dimensional Data
Papers that mentioned: 1

Very Likely Science (85)

pypi: scott

Papers that mentioned: 1

Very Likely Science (65)

pypi: wildcat

Wildcat Python SDK to Use Annealers
Papers that mentioned: 1

Very Likely Science (65)

pypi: riboplot

Plot read counts of RiboSeq data from BAM format alignment files
Papers that mentioned: 1

Very Likely Science (80)

pypi: RiboMiner

A python toolset for mining multi-dimensional features of the translatome with ribosome profiling data
Papers that mentioned: 1

Very Likely Science (100)

pypi: Factom

Papers that mentioned: 1

Very Likely Science (65)

cran: rrecsys

Environment for Evaluating Recommender Systems
Papers that mentioned: 1

Very Likely Science (75)

pypi: alert

A quick package to raise alerts for long running programs.
Papers that mentioned: 1

Very Likely Science (100)

pypi: WordInfo

A library to find defintions, pos, synonyms, antonyms, and word origins. It is python 3 compatible and requires bs4 and urllib.request
Papers that mentioned: 1

Very Likely Science (65)

pypi: FAdo

A library of tools to manipulate formal languages' representations mainly automata and regular expressions.
Papers that mentioned: 1

Very Likely Science (90)

pypi: runs

Runs a block of text as a subrprocess
Papers that mentioned: 1

Very Likely Science (65)

pypi: dpkt

fast, simple packet creation / parsing, with definitions for the basic TCP/IP protocols
Papers that mentioned: 1

Very Likely Science (100)

cran: barcode

Render Barcode Distribution Plots
Papers that mentioned: 1

Very Likely Science (83)

pypi: dongle

Papers that mentioned: 1

Unlikely Science (0)

pypi: docutils

Docutils -- Python Documentation Utilities
Papers that mentioned: 1

Very Likely Science (65)

pypi: draft

Papers that mentioned: 1

Very Likely Science (65)

pypi: ecp

Eraple ECP (e-Commerce Platform)
Papers that mentioned: 1

Likely Science (40)

cran: BarcodingR

Species Identification using DNA Barcodes
Papers that mentioned: 1

Very Likely Science (83)

pypi: scvi-tools

Deep probabilistic analysis of single-cell omics data.
Papers that mentioned: 1

Very Likely Science (100)

pypi: scvi

Single-cell Variational Inference
Papers that mentioned: 1

Very Likely Science (100)

pypi: cider

Hassle-free bootstrapping using Homebrew.
Papers that mentioned: 1

Very Likely Science (65)

cran: adaptMCMC

Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler
Papers that mentioned: 1

Very Likely Science (100)

pypi: zvi

Zorroa Visual Intelligence ML Environment
Papers that mentioned: 1

Very Likely Science (65)

pypi: cif2ice

Prepare ice modules for GenIce from CIF file
Papers that mentioned: 1

Very Likely Science (65)

pypi: Ale

Abstraction Layer for Ephemerides
Papers that mentioned: 1

Very Likely Science (65)

cran: SECP

Statistical Estimation of Cluster Parameters
Papers that mentioned: 1

Very Likely Science (85)

pypi: riboflow

Classifying Putative Riboswitch Sequences
Papers that mentioned: 1

Very Likely Science (65)

cran: upsetjs

'HTMLWidget' Wrapper of 'UpSet.js' for Exploring Large Set Intersections
Papers that mentioned: 1

Very Likely Science (75)

pypi: wordpress

Wordpress API client
Papers that mentioned: 1

Likely Science (40)

pypi: diffractem

Some tools for working with serial electron microscopy data.
Papers that mentioned: 1

Very Likely Science (75)

cran: rrpack

Reduced-Rank Regression
Papers that mentioned: 1

Very Likely Science (93)

pypi: ding

Papers that mentioned: 1

Unlikely Science (0)

Functional ANOVA: an implementation of the ICML 2014 paper 'An Efficient Approach for Assessing Hyperparameter Importance' by Frank Hutter, Holger Hoos and Kevin Leyton-Brown.
Papers that mentioned: 1

Likely Science (55)